miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 105652 0.78 0.08692
Target:  5'- cGCCgCCCGCGGCCggaGAGCGugccGCCUCGg -3'
miRNA:   3'- -CGGgGGGCGCCGG---CUCGUuu--CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 63731 0.78 0.089136
Target:  5'- cUCCCCC-CGGCCGAGCAAcAGCgCCGc -3'
miRNA:   3'- cGGGGGGcGCCGGCUCGUU-UCGgGGC- -5'
6364 3' -64.8 NC_001847.1 + 9941 0.77 0.091406
Target:  5'- cGCUCgCCGCGGcCCGGGCGccuucuGCCCCGa -3'
miRNA:   3'- -CGGGgGGCGCC-GGCUCGUuu----CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 90736 0.77 0.093732
Target:  5'- aGCCgCUCGCGGCgCGuGGCcGGGCCCCGg -3'
miRNA:   3'- -CGGgGGGCGCCG-GC-UCGuUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 65445 0.77 0.093732
Target:  5'- cGCgCgCCGCGGaCCGAGCGccGGCCCCGc -3'
miRNA:   3'- -CGgGgGGCGCC-GGCUCGUu-UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 28340 0.77 0.101047
Target:  5'- cGCCCCgCGgGGCCGcGCGcccGGGCCCCc -3'
miRNA:   3'- -CGGGGgGCgCCGGCuCGU---UUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 131153 0.77 0.101047
Target:  5'- cGCCCCgCGgGGCCGcGCGcccGGGCCCCc -3'
miRNA:   3'- -CGGGGgGCgCCGGCuCGU---UUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 123957 0.77 0.10622
Target:  5'- aGCCCCgCGCGGaCC-AGCGGcAGCCCCa -3'
miRNA:   3'- -CGGGGgGCGCC-GGcUCGUU-UCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 84308 0.76 0.108898
Target:  5'- aGCgCCCCC-CGGCgCGGGCAgcGCCCCc -3'
miRNA:   3'- -CG-GGGGGcGCCG-GCUCGUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 3099 0.76 0.11164
Target:  5'- cGCCCCCCacgauaGCGGCCaGGUAGAGCgCCu -3'
miRNA:   3'- -CGGGGGG------CGCCGGcUCGUUUCGgGGc -5'
6364 3' -64.8 NC_001847.1 + 120141 0.76 0.11164
Target:  5'- gGCCCCaCCGCGGCCGAGgGgcGCUugCCa -3'
miRNA:   3'- -CGGGG-GGCGCCGGCUCgUuuCGG--GGc -5'
6364 3' -64.8 NC_001847.1 + 31956 0.76 0.114447
Target:  5'- aGCCUgCCGCGGCgGcGGC-GGGCCCCGu -3'
miRNA:   3'- -CGGGgGGCGCCGgC-UCGuUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 83520 0.76 0.114447
Target:  5'- uGCCuUCCUGCGGuCCGuGCGccGCCCCGg -3'
miRNA:   3'- -CGG-GGGGCGCC-GGCuCGUuuCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 32871 0.76 0.114447
Target:  5'- aCCUCaCgGCGGCCGAcgGCGAGGCCUCGg -3'
miRNA:   3'- cGGGG-GgCGCCGGCU--CGUUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 34290 0.76 0.117319
Target:  5'- cGCCgCgCUCGCGGCCGucAGCGAGGCUUCGg -3'
miRNA:   3'- -CGG-G-GGGCGCCGGC--UCGUUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 106422 0.76 0.117319
Target:  5'- cGCUgCCCGCGGCCGcGCcgcgcacaaaGGGGUCCCGg -3'
miRNA:   3'- -CGGgGGGCGCCGGCuCG----------UUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 60141 0.76 0.117319
Target:  5'- gGCCCCCCGCccGCCG-GCGGAcugagccuggcGCCCCGc -3'
miRNA:   3'- -CGGGGGGCGc-CGGCuCGUUU-----------CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 86300 0.76 0.11937
Target:  5'- cGCgCCgCGCGGCCGAggcgcccccgcgcgGCAAGGCCCgGa -3'
miRNA:   3'- -CGgGGgGCGCCGGCU--------------CGUUUCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 39372 0.76 0.120258
Target:  5'- cGCCCCCCGC-GCCaGAGC--GGCCCgCGc -3'
miRNA:   3'- -CGGGGGGCGcCGG-CUCGuuUCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 39399 0.76 0.120258
Target:  5'- cGCCCCCCGC-GCCaGAGC--GGCCCgCGc -3'
miRNA:   3'- -CGGGGGGCGcCGG-CUCGuuUCGGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.