Results 61 - 70 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 42526 | 0.71 | 0.594808 |
|
Target: 5'- cCGUccGUGGAaaagcUGCUCgGUGAGgGCGAg -3' miRNA: 3'- -GCGuuCACCU-----ACGAGaCGCUCgCGCU- -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 14562 | 0.72 | 0.574255 |
|
Target: 5'- cCGCAGcGcGGGUGCUg-GCGGGCGCGc -3' miRNA: 3'- -GCGUU-CaCCUACGAgaCGCUCGCGCu -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 70698 | 0.72 | 0.564039 |
|
Target: 5'- cCGCGGGcGGcgGCgggggCgcccgcgGCGAGCGCGAg -3' miRNA: 3'- -GCGUUCaCCuaCGa----Ga------CGCUCGCGCU- -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 125465 | 0.74 | 0.437676 |
|
Target: 5'- gGCGGGUcGGcggcaGCUCgcgGCGGGCGCGAg -3' miRNA: 3'- gCGUUCA-CCua---CGAGa--CGCUCGCGCU- -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 7242 | 0.75 | 0.410828 |
|
Target: 5'- gGCuGGUcGGGUgGCUgUGCGGGCGCGGc -3' miRNA: 3'- gCGuUCA-CCUA-CGAgACGCUCGCGCU- -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 21861 | 0.75 | 0.402108 |
|
Target: 5'- aGCAGGUGG-UGCgggggCUGCG-GCGCGc -3' miRNA: 3'- gCGUUCACCuACGa----GACGCuCGCGCu -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 77507 | 0.76 | 0.355512 |
|
Target: 5'- aGUcGGUGGccggggagcucgcgcGUGC-CUGCGAGCGCGAg -3' miRNA: 3'- gCGuUCACC---------------UACGaGACGCUCGCGCU- -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 116676 | 0.76 | 0.344473 |
|
Target: 5'- uGCGuGUGGGUccgGCgCUGCGGGCGCGGc -3' miRNA: 3'- gCGUuCACCUA---CGaGACGCUCGCGCU- -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 18634 | 0.81 | 0.161709 |
|
Target: 5'- gCGCAGGcagaGGUGCUCgGCGAGCGCGAc -3' miRNA: 3'- -GCGUUCac--CUACGAGaCGCUCGCGCU- -5' |
|||||||
| 6364 | 5' | -56.1 | NC_001847.1 | + | 117383 | 1.09 | 0.00224 |
|
Target: 5'- gCGCAAGUGGAUGCUCUGCGAGCGCGAg -3' miRNA: 3'- -GCGUUCACCUACGAGACGCUCGCGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home