miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 57086 0.69 0.73816
Target:  5'- gCGCcgucGUGGccGCgagggGCGAGCGCGAg -3'
miRNA:   3'- -GCGuu--CACCuaCGaga--CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 133187 0.69 0.73816
Target:  5'- gCGCGGGcugcccucgcUGGAggaGCUCUGCGccGCGCGc -3'
miRNA:   3'- -GCGUUC----------ACCUa--CGAGACGCu-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 86413 0.69 0.73816
Target:  5'- gCGCAGcucGUGGAUuuguugGCggcgCUGCGcGGCGCGGg -3'
miRNA:   3'- -GCGUU---CACCUA------CGa---GACGC-UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 33180 0.69 0.73816
Target:  5'- aGCGGcUGGccgGCUCUGCGcccgacuuggcGGCGCGGg -3'
miRNA:   3'- gCGUUcACCua-CGAGACGC-----------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 115676 0.69 0.73816
Target:  5'- uGCGGGUGaGcgGCUgcGCGGGgGCGAg -3'
miRNA:   3'- gCGUUCAC-CuaCGAgaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 30579 0.69 0.737171
Target:  5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3'
miRNA:   3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 133392 0.69 0.737171
Target:  5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3'
miRNA:   3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 37113 0.69 0.728233
Target:  5'- cCGCuGGUGuucAUGCUCUG-GGGCGCGc -3'
miRNA:   3'- -GCGuUCACc--UACGAGACgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 71863 0.69 0.71822
Target:  5'- aGC-GGUGGAaGCggCcGCGAGCGCGc -3'
miRNA:   3'- gCGuUCACCUaCGa-GaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 19862 0.69 0.709144
Target:  5'- cCGCu-GUGGAcacGCUCaucauggcggcgcugGCGGGCGCGAg -3'
miRNA:   3'- -GCGuuCACCUa--CGAGa--------------CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 106099 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 3286 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 49725 0.7 0.687768
Target:  5'- uGCAAGUGGgcGC-CgGCGAG-GCGGu -3'
miRNA:   3'- gCGUUCACCuaCGaGaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 41639 0.7 0.675454
Target:  5'- gGCGAGUGGGUGCggauccaccCGAcGCGCGGc -3'
miRNA:   3'- gCGUUCACCUACGagac-----GCU-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 56341 0.7 0.667214
Target:  5'- gGCGAaggGGuccacAUGCUCcGCGGGCGCGGg -3'
miRNA:   3'- gCGUUca-CC-----UACGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 112099 0.7 0.636187
Target:  5'- gCGCAAgGUGGAcugGCUCgaGCG-GCGCGu -3'
miRNA:   3'- -GCGUU-CACCUa--CGAGa-CGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 53584 0.7 0.635151
Target:  5'- gGCGAcGUGGAUGCcuuUUUGCGGGCcacggugGCGGg -3'
miRNA:   3'- gCGUU-CACCUACG---AGACGCUCG-------CGCU- -5'
6364 5' -56.1 NC_001847.1 + 93752 0.71 0.625827
Target:  5'- gCGCGGuccgGGAgcgGCUgaGCGAGCGUGAc -3'
miRNA:   3'- -GCGUUca--CCUa--CGAgaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 20071 0.71 0.605129
Target:  5'- aGCGGcGUGGcgGCUCccGCG-GCGCGGc -3'
miRNA:   3'- gCGUU-CACCuaCGAGa-CGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 42526 0.71 0.594808
Target:  5'- cCGUccGUGGAaaagcUGCUCgGUGAGgGCGAg -3'
miRNA:   3'- -GCGuuCACCU-----ACGAGaCGCUCgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.