Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6364 | 5' | -56.1 | NC_001847.1 | + | 1920 | 0.68 | 0.795403 |
Target: 5'- gGCAGGUGGcgagGCUUaGCcGGCGCGc -3' miRNA: 3'- gCGUUCACCua--CGAGaCGcUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 55502 | 0.68 | 0.795403 |
Target: 5'- gGC-AGUGGuucgGCg--GCGAGCGCGu -3' miRNA: 3'- gCGuUCACCua--CGagaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 47850 | 0.67 | 0.804469 |
Target: 5'- uCGCAGGaGGucgcGUGCUgcGCGGGCGCGc -3' miRNA: 3'- -GCGUUCaCC----UACGAgaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 61317 | 0.67 | 0.804469 |
Target: 5'- gCGCGGGUGcgcGggGCgggGCGGGCGCGc -3' miRNA: 3'- -GCGUUCAC---CuaCGagaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 119551 | 0.67 | 0.804469 |
Target: 5'- gGCAAG-GGgcGCgcggccagacUCUGCGGGCaGCGGc -3' miRNA: 3'- gCGUUCaCCuaCG----------AGACGCUCG-CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 62903 | 0.67 | 0.813374 |
Target: 5'- aGCGGGUGGcgcggGUGCUCggggcccGCGGGCGg-- -3' miRNA: 3'- gCGUUCACC-----UACGAGa------CGCUCGCgcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 58088 | 0.67 | 0.81689 |
Target: 5'- cCGC-AGcGGGUGCcgcgccgcuacuacuUCUGCG-GCGCGGc -3' miRNA: 3'- -GCGuUCaCCUACG---------------AGACGCuCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 134194 | 0.67 | 0.822112 |
Target: 5'- gCGCAGcGUGGA-GCg--GCGcGCGCGGg -3' miRNA: 3'- -GCGUU-CACCUaCGagaCGCuCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 10852 | 0.67 | 0.822112 |
Target: 5'- gGCGcGUGGccgagGCgcgGCGGGCGCGGg -3' miRNA: 3'- gCGUuCACCua---CGagaCGCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 127733 | 0.67 | 0.822112 |
Target: 5'- gGCAAGccgccGGUGCcgUCUGcCGAGCGCGc -3' miRNA: 3'- gCGUUCac---CUACG--AGAC-GCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 6870 | 0.67 | 0.829824 |
Target: 5'- gCGCGGGUagggccuugccgaGGAgcagUGCgUCgGCGAGCGCGc -3' miRNA: 3'- -GCGUUCA-------------CCU----ACG-AGaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 76 | 0.67 | 0.830672 |
Target: 5'- gGCGGGgugggGGAUGggC-GCgGAGCGCGAg -3' miRNA: 3'- gCGUUCa----CCUACgaGaCG-CUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 65081 | 0.67 | 0.839047 |
Target: 5'- cCGCAGGacgGGcaGUGCUaagCUGCGAGCgagccGCGGc -3' miRNA: 3'- -GCGUUCa--CC--UACGA---GACGCUCG-----CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 36662 | 0.67 | 0.84723 |
Target: 5'- uCGCAGGUGGggGCUU--CGAuGCGCc- -3' miRNA: 3'- -GCGUUCACCuaCGAGacGCU-CGCGcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 90157 | 0.67 | 0.84723 |
Target: 5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3' miRNA: 3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 51213 | 0.66 | 0.855212 |
Target: 5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3' miRNA: 3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 68098 | 0.66 | 0.860677 |
Target: 5'- gCGCGagcGGUGGugacgaugacuucgGUGgUCgcggGCGAGCGCGc -3' miRNA: 3'- -GCGU---UCACC--------------UACgAGa---CGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 4568 | 0.66 | 0.862987 |
Target: 5'- uGgAAGUGGAaGUggUGCGGGuCGCGGu -3' miRNA: 3'- gCgUUCACCUaCGagACGCUC-GCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 80198 | 0.66 | 0.862987 |
Target: 5'- uGCGGGcGGGUGCgCcGCGaAGCGCa- -3' miRNA: 3'- gCGUUCaCCUACGaGaCGC-UCGCGcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 22481 | 0.66 | 0.863753 |
Target: 5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3' miRNA: 3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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