miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 70698 0.72 0.564039
Target:  5'- cCGCGGGcGGcgGCgggggCgcccgcgGCGAGCGCGAg -3'
miRNA:   3'- -GCGUUCaCCuaCGa----Ga------CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 71863 0.69 0.71822
Target:  5'- aGC-GGUGGAaGCggCcGCGAGCGCGc -3'
miRNA:   3'- gCGuUCACCUaCGa-GaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 75405 0.66 0.885011
Target:  5'- aGCGAGUcGA-GCUCgcgccggacGcCGAGCGCGAu -3'
miRNA:   3'- gCGUUCAcCUaCGAGa--------C-GCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 77507 0.76 0.355512
Target:  5'- aGUcGGUGGccggggagcucgcgcGUGC-CUGCGAGCGCGAg -3'
miRNA:   3'- gCGuUCACC---------------UACGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 78850 0.66 0.877893
Target:  5'- gGCGAGUagcuGGuGUGCUC-GCGGuGCGCGc -3'
miRNA:   3'- gCGUUCA----CC-UACGAGaCGCU-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 80198 0.66 0.862987
Target:  5'- uGCGGGcGGGUGCgCcGCGaAGCGCa- -3'
miRNA:   3'- gCGUUCaCCUACGaGaCGC-UCGCGcu -5'
6364 5' -56.1 NC_001847.1 + 81106 0.66 0.885011
Target:  5'- uCGCccAGUGGcUGCUCca-GAGCGCGc -3'
miRNA:   3'- -GCGu-UCACCuACGAGacgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 85859 0.68 0.747993
Target:  5'- aGCGAGUcGcgGCUCcGCGcggcgagcAGCGCGAg -3'
miRNA:   3'- gCGUUCAcCuaCGAGaCGC--------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 86219 0.68 0.795403
Target:  5'- uGCAAGUGGAgaGC-CUGCaccGCGUGGa -3'
miRNA:   3'- gCGUUCACCUa-CGaGACGcu-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 86413 0.69 0.73816
Target:  5'- gCGCAGcucGUGGAUuuguugGCggcgCUGCGcGGCGCGGg -3'
miRNA:   3'- -GCGUU---CACCUA------CGa---GACGC-UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 90157 0.67 0.84723
Target:  5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3'
miRNA:   3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5'
6364 5' -56.1 NC_001847.1 + 93752 0.71 0.625827
Target:  5'- gCGCGGuccgGGAgcgGCUgaGCGAGCGUGAc -3'
miRNA:   3'- -GCGUUca--CCUa--CGAgaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 96315 0.68 0.786186
Target:  5'- cCGCGGG-GGAUcGCUCggugucgGUGGGCgGCGGg -3'
miRNA:   3'- -GCGUUCaCCUA-CGAGa------CGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 100508 0.68 0.776827
Target:  5'- gGCGgugcGGUGuGGUGggCUGCGGGuCGCGGa -3'
miRNA:   3'- gCGU----UCAC-CUACgaGACGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 106099 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 112099 0.7 0.636187
Target:  5'- gCGCAAgGUGGAcugGCUCgaGCG-GCGCGu -3'
miRNA:   3'- -GCGUU-CACCUa--CGAGa-CGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 115676 0.69 0.73816
Target:  5'- uGCGGGUGaGcgGCUgcGCGGGgGCGAg -3'
miRNA:   3'- gCGUUCAC-CuaCGAgaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 116571 0.66 0.887794
Target:  5'- gCGCAcGUGGGcaucugcgcucUgggcgcagcgcugccGCUCUGCG-GCGCGGa -3'
miRNA:   3'- -GCGUuCACCU-----------A---------------CGAGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 116676 0.76 0.344473
Target:  5'- uGCGuGUGGGUccgGCgCUGCGGGCGCGGc -3'
miRNA:   3'- gCGUuCACCUA---CGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 117383 1.09 0.00224
Target:  5'- gCGCAAGUGGAUGCUCUGCGAGCGCGAg -3'
miRNA:   3'- -GCGUUCACCUACGAGACGCUCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.