miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 37113 0.69 0.728233
Target:  5'- cCGCuGGUGuucAUGCUCUG-GGGCGCGc -3'
miRNA:   3'- -GCGuUCACc--UACGAGACgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 41639 0.7 0.675454
Target:  5'- gGCGAGUGGGUGCggauccaccCGAcGCGCGGc -3'
miRNA:   3'- gCGUUCACCUACGagac-----GCU-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 42526 0.71 0.594808
Target:  5'- cCGUccGUGGAaaagcUGCUCgGUGAGgGCGAg -3'
miRNA:   3'- -GCGuuCACCU-----ACGAGaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 43663 0.66 0.868304
Target:  5'- gGCGAGUGuGUGCUCUGCaaucuucugcucacGccGGCGCa- -3'
miRNA:   3'- gCGUUCACcUACGAGACG--------------C--UCGCGcu -5'
6364 5' -56.1 NC_001847.1 + 47850 0.67 0.804469
Target:  5'- uCGCAGGaGGucgcGUGCUgcGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCaCC----UACGAgaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 49725 0.7 0.687768
Target:  5'- uGCAAGUGGgcGC-CgGCGAG-GCGGu -3'
miRNA:   3'- gCGUUCACCuaCGaGaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 49797 0.66 0.885011
Target:  5'- aCGCccccGGGUGCgcugCUGCuGGGCGCGc -3'
miRNA:   3'- -GCGuucaCCUACGa---GACG-CUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 51213 0.66 0.855212
Target:  5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3'
miRNA:   3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 53584 0.7 0.635151
Target:  5'- gGCGAcGUGGAUGCcuuUUUGCGGGCcacggugGCGGg -3'
miRNA:   3'- gCGUU-CACCUACG---AGACGCUCG-------CGCU- -5'
6364 5' -56.1 NC_001847.1 + 55502 0.68 0.795403
Target:  5'- gGC-AGUGGuucgGCg--GCGAGCGCGu -3'
miRNA:   3'- gCGuUCACCua--CGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 56341 0.7 0.667214
Target:  5'- gGCGAaggGGuccacAUGCUCcGCGGGCGCGGg -3'
miRNA:   3'- gCGUUca-CC-----UACGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 57086 0.69 0.73816
Target:  5'- gCGCcgucGUGGccGCgagggGCGAGCGCGAg -3'
miRNA:   3'- -GCGuu--CACCuaCGaga--CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 58088 0.67 0.81689
Target:  5'- cCGC-AGcGGGUGCcgcgccgcuacuacuUCUGCG-GCGCGGc -3'
miRNA:   3'- -GCGuUCaCCUACG---------------AGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 58912 0.66 0.87055
Target:  5'- cCGCGGGcGGGUGU--UGCGcAGCaGCGAa -3'
miRNA:   3'- -GCGUUCaCCUACGagACGC-UCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 59546 0.68 0.786186
Target:  5'- gGCAggcGGUGGggGCg--GCGGGgGCGGu -3'
miRNA:   3'- gCGU---UCACCuaCGagaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 61317 0.67 0.804469
Target:  5'- gCGCGGGUGcgcGggGCgggGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCAC---CuaCGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 62903 0.67 0.813374
Target:  5'- aGCGGGUGGcgcggGUGCUCggggcccGCGGGCGg-- -3'
miRNA:   3'- gCGUUCACC-----UACGAGa------CGCUCGCgcu -5'
6364 5' -56.1 NC_001847.1 + 64209 0.71 0.594808
Target:  5'- gCGCGGGUcgGGGUGCcCggGCGgcGGCGCGAa -3'
miRNA:   3'- -GCGUUCA--CCUACGaGa-CGC--UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 65081 0.67 0.839047
Target:  5'- cCGCAGGacgGGcaGUGCUaagCUGCGAGCgagccGCGGc -3'
miRNA:   3'- -GCGUUCa--CC--UACGA---GACGCUCG-----CGCU- -5'
6364 5' -56.1 NC_001847.1 + 68098 0.66 0.860677
Target:  5'- gCGCGagcGGUGGugacgaugacuucgGUGgUCgcggGCGAGCGCGc -3'
miRNA:   3'- -GCGU---UCACC--------------UACgAGa---CGCUCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.