miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 86413 0.69 0.73816
Target:  5'- gCGCAGcucGUGGAUuuguugGCggcgCUGCGcGGCGCGGg -3'
miRNA:   3'- -GCGUU---CACCUA------CGa---GACGC-UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 86219 0.68 0.795403
Target:  5'- uGCAAGUGGAgaGC-CUGCaccGCGUGGa -3'
miRNA:   3'- gCGUUCACCUa-CGaGACGcu-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 85859 0.68 0.747993
Target:  5'- aGCGAGUcGcgGCUCcGCGcggcgagcAGCGCGAg -3'
miRNA:   3'- gCGUUCAcCuaCGAGaCGC--------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 81106 0.66 0.885011
Target:  5'- uCGCccAGUGGcUGCUCca-GAGCGCGc -3'
miRNA:   3'- -GCGu-UCACCuACGAGacgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 80198 0.66 0.862987
Target:  5'- uGCGGGcGGGUGCgCcGCGaAGCGCa- -3'
miRNA:   3'- gCGUUCaCCUACGaGaCGC-UCGCGcu -5'
6364 5' -56.1 NC_001847.1 + 78850 0.66 0.877893
Target:  5'- gGCGAGUagcuGGuGUGCUC-GCGGuGCGCGc -3'
miRNA:   3'- gCGUUCA----CC-UACGAGaCGCU-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 77507 0.76 0.355512
Target:  5'- aGUcGGUGGccggggagcucgcgcGUGC-CUGCGAGCGCGAg -3'
miRNA:   3'- gCGuUCACC---------------UACGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 75405 0.66 0.885011
Target:  5'- aGCGAGUcGA-GCUCgcgccggacGcCGAGCGCGAu -3'
miRNA:   3'- gCGUUCAcCUaCGAGa--------C-GCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 71863 0.69 0.71822
Target:  5'- aGC-GGUGGAaGCggCcGCGAGCGCGc -3'
miRNA:   3'- gCGuUCACCUaCGa-GaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 70698 0.72 0.564039
Target:  5'- cCGCGGGcGGcgGCgggggCgcccgcgGCGAGCGCGAg -3'
miRNA:   3'- -GCGUUCaCCuaCGa----Ga------CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 68098 0.66 0.860677
Target:  5'- gCGCGagcGGUGGugacgaugacuucgGUGgUCgcggGCGAGCGCGc -3'
miRNA:   3'- -GCGU---UCACC--------------UACgAGa---CGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 65081 0.67 0.839047
Target:  5'- cCGCAGGacgGGcaGUGCUaagCUGCGAGCgagccGCGGc -3'
miRNA:   3'- -GCGUUCa--CC--UACGA---GACGCUCG-----CGCU- -5'
6364 5' -56.1 NC_001847.1 + 64209 0.71 0.594808
Target:  5'- gCGCGGGUcgGGGUGCcCggGCGgcGGCGCGAa -3'
miRNA:   3'- -GCGUUCA--CCUACGaGa-CGC--UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 62903 0.67 0.813374
Target:  5'- aGCGGGUGGcgcggGUGCUCggggcccGCGGGCGg-- -3'
miRNA:   3'- gCGUUCACC-----UACGAGa------CGCUCGCgcu -5'
6364 5' -56.1 NC_001847.1 + 61317 0.67 0.804469
Target:  5'- gCGCGGGUGcgcGggGCgggGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCAC---CuaCGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 59546 0.68 0.786186
Target:  5'- gGCAggcGGUGGggGCg--GCGGGgGCGGu -3'
miRNA:   3'- gCGU---UCACCuaCGagaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 58912 0.66 0.87055
Target:  5'- cCGCGGGcGGGUGU--UGCGcAGCaGCGAa -3'
miRNA:   3'- -GCGUUCaCCUACGagACGC-UCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 58088 0.67 0.81689
Target:  5'- cCGC-AGcGGGUGCcgcgccgcuacuacuUCUGCG-GCGCGGc -3'
miRNA:   3'- -GCGuUCaCCUACG---------------AGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 57086 0.69 0.73816
Target:  5'- gCGCcgucGUGGccGCgagggGCGAGCGCGAg -3'
miRNA:   3'- -GCGuu--CACCuaCGaga--CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 56341 0.7 0.667214
Target:  5'- gGCGAaggGGuccacAUGCUCcGCGGGCGCGGg -3'
miRNA:   3'- gCGUUca-CC-----UACGAGaCGCUCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.