miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 100508 0.68 0.776827
Target:  5'- gGCGgugcGGUGuGGUGggCUGCGGGuCGCGGa -3'
miRNA:   3'- gCGU----UCAC-CUACgaGACGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 33180 0.69 0.73816
Target:  5'- aGCGGcUGGccgGCUCUGCGcccgacuuggcGGCGCGGg -3'
miRNA:   3'- gCGUUcACCua-CGAGACGC-----------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 75405 0.66 0.885011
Target:  5'- aGCGAGUcGA-GCUCgcgccggacGcCGAGCGCGAu -3'
miRNA:   3'- gCGUUCAcCUaCGAGa--------C-GCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 68098 0.66 0.860677
Target:  5'- gCGCGagcGGUGGugacgaugacuucgGUGgUCgcggGCGAGCGCGc -3'
miRNA:   3'- -GCGU---UCACC--------------UACgAGa---CGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 1920 0.68 0.795403
Target:  5'- gGCAGGUGGcgagGCUUaGCcGGCGCGc -3'
miRNA:   3'- gCGUUCACCua--CGAGaCGcUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 133392 0.69 0.737171
Target:  5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3'
miRNA:   3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 36662 0.67 0.84723
Target:  5'- uCGCAGGUGGggGCUU--CGAuGCGCc- -3'
miRNA:   3'- -GCGUUCACCuaCGAGacGCU-CGCGcu -5'
6364 5' -56.1 NC_001847.1 + 19862 0.69 0.709144
Target:  5'- cCGCu-GUGGAcacGCUCaucauggcggcgcugGCGGGCGCGAg -3'
miRNA:   3'- -GCGuuCACCUa--CGAGa--------------CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 106099 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 86219 0.68 0.795403
Target:  5'- uGCAAGUGGAgaGC-CUGCaccGCGUGGa -3'
miRNA:   3'- gCGUUCACCUa-CGaGACGcu-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 43663 0.66 0.868304
Target:  5'- gGCGAGUGuGUGCUCUGCaaucuucugcucacGccGGCGCa- -3'
miRNA:   3'- gCGUUCACcUACGAGACG--------------C--UCGCGcu -5'
6364 5' -56.1 NC_001847.1 + 7545 0.68 0.767336
Target:  5'- aGCAcauacaGGAUGCUCaGCGcauGCGCGAc -3'
miRNA:   3'- gCGUuca---CCUACGAGaCGCu--CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 86413 0.69 0.73816
Target:  5'- gCGCAGcucGUGGAUuuguugGCggcgCUGCGcGGCGCGGg -3'
miRNA:   3'- -GCGUU---CACCUA------CGa---GACGC-UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 6870 0.67 0.829824
Target:  5'- gCGCGGGUagggccuugccgaGGAgcagUGCgUCgGCGAGCGCGc -3'
miRNA:   3'- -GCGUUCA-------------CCU----ACG-AGaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 80198 0.66 0.862987
Target:  5'- uGCGGGcGGGUGCgCcGCGaAGCGCa- -3'
miRNA:   3'- gCGUUCaCCUACGaGaCGC-UCGCGcu -5'
6364 5' -56.1 NC_001847.1 + 81106 0.66 0.885011
Target:  5'- uCGCccAGUGGcUGCUCca-GAGCGCGc -3'
miRNA:   3'- -GCGu-UCACCuACGAGacgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 32007 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 42526 0.71 0.594808
Target:  5'- cCGUccGUGGAaaagcUGCUCgGUGAGgGCGAg -3'
miRNA:   3'- -GCGuuCACCU-----ACGAGaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 20071 0.71 0.605129
Target:  5'- aGCGGcGUGGcgGCUCccGCG-GCGCGGc -3'
miRNA:   3'- gCGUU-CACCuaCGAGa-CGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 64209 0.71 0.594808
Target:  5'- gCGCGGGUcgGGGUGCcCggGCGgcGGCGCGAa -3'
miRNA:   3'- -GCGUUCA--CCUACGaGa-CGC--UCGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.