miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 78850 0.66 0.877893
Target:  5'- gGCGAGUagcuGGuGUGCUC-GCGGuGCGCGc -3'
miRNA:   3'- gCGUUCA----CC-UACGAGaCGCU-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 120777 0.66 0.87055
Target:  5'- cCGCGGccGUGGca--UCUGCGAGCGuCGGc -3'
miRNA:   3'- -GCGUU--CACCuacgAGACGCUCGC-GCU- -5'
6364 5' -56.1 NC_001847.1 + 22481 0.66 0.863753
Target:  5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3'
miRNA:   3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 51213 0.66 0.855212
Target:  5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3'
miRNA:   3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 90157 0.67 0.84723
Target:  5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3'
miRNA:   3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5'
6364 5' -56.1 NC_001847.1 + 127733 0.67 0.822112
Target:  5'- gGCAAGccgccGGUGCcgUCUGcCGAGCGCGc -3'
miRNA:   3'- gCGUUCac---CUACG--AGAC-GCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 134194 0.67 0.822112
Target:  5'- gCGCAGcGUGGA-GCg--GCGcGCGCGGg -3'
miRNA:   3'- -GCGUU-CACCUaCGagaCGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 85859 0.68 0.747993
Target:  5'- aGCGAGUcGcgGCUCcGCGcggcgagcAGCGCGAg -3'
miRNA:   3'- gCGUUCAcCuaCGAGaCGC--------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 32007 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 55502 0.68 0.795403
Target:  5'- gGC-AGUGGuucgGCg--GCGAGCGCGu -3'
miRNA:   3'- gCGuUCACCua--CGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 61317 0.67 0.804469
Target:  5'- gCGCGGGUGcgcGggGCgggGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCAC---CuaCGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 119551 0.67 0.804469
Target:  5'- gGCAAG-GGgcGCgcggccagacUCUGCGGGCaGCGGc -3'
miRNA:   3'- gCGUUCaCCuaCG----------AGACGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 62903 0.67 0.813374
Target:  5'- aGCGGGUGGcgcggGUGCUCggggcccGCGGGCGg-- -3'
miRNA:   3'- gCGUUCACC-----UACGAGa------CGCUCGCgcu -5'
6364 5' -56.1 NC_001847.1 + 58088 0.67 0.81689
Target:  5'- cCGC-AGcGGGUGCcgcgccgcuacuacuUCUGCG-GCGCGGc -3'
miRNA:   3'- -GCGuUCaCCUACG---------------AGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 53584 0.7 0.635151
Target:  5'- gGCGAcGUGGAUGCcuuUUUGCGGGCcacggugGCGGg -3'
miRNA:   3'- gCGUU-CACCUACG---AGACGCUCG-------CGCU- -5'
6364 5' -56.1 NC_001847.1 + 14562 0.72 0.574255
Target:  5'- cCGCAGcGcGGGUGCUg-GCGGGCGCGc -3'
miRNA:   3'- -GCGUU-CaCCUACGAgaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 7242 0.75 0.410828
Target:  5'- gGCuGGUcGGGUgGCUgUGCGGGCGCGGc -3'
miRNA:   3'- gCGuUCA-CCUA-CGAgACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 21861 0.75 0.402108
Target:  5'- aGCAGGUGG-UGCgggggCUGCG-GCGCGc -3'
miRNA:   3'- gCGUUCACCuACGa----GACGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 77507 0.76 0.355512
Target:  5'- aGUcGGUGGccggggagcucgcgcGUGC-CUGCGAGCGCGAg -3'
miRNA:   3'- gCGuUCACC---------------UACGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 81106 0.66 0.885011
Target:  5'- uCGCccAGUGGcUGCUCca-GAGCGCGc -3'
miRNA:   3'- -GCGu-UCACCuACGAGacgCUCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.