miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 37113 0.69 0.728233
Target:  5'- cCGCuGGUGuucAUGCUCUG-GGGCGCGc -3'
miRNA:   3'- -GCGuUCACc--UACGAGACgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 61317 0.67 0.804469
Target:  5'- gCGCGGGUGcgcGggGCgggGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCAC---CuaCGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 55502 0.68 0.795403
Target:  5'- gGC-AGUGGuucgGCg--GCGAGCGCGu -3'
miRNA:   3'- gCGuUCACCua--CGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 32007 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 85859 0.68 0.747993
Target:  5'- aGCGAGUcGcgGCUCcGCGcggcgagcAGCGCGAg -3'
miRNA:   3'- gCGUUCAcCuaCGAGaCGC--------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 133187 0.69 0.73816
Target:  5'- gCGCGGGcugcccucgcUGGAggaGCUCUGCGccGCGCGc -3'
miRNA:   3'- -GCGUUC----------ACCUa--CGAGACGCu-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 115676 0.69 0.73816
Target:  5'- uGCGGGUGaGcgGCUgcGCGGGgGCGAg -3'
miRNA:   3'- gCGUUCAC-CuaCGAgaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 57086 0.69 0.73816
Target:  5'- gCGCcgucGUGGccGCgagggGCGAGCGCGAg -3'
miRNA:   3'- -GCGuu--CACCuaCGaga--CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 30579 0.69 0.737171
Target:  5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3'
miRNA:   3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 119551 0.67 0.804469
Target:  5'- gGCAAG-GGgcGCgcggccagacUCUGCGGGCaGCGGc -3'
miRNA:   3'- gCGUUCaCCuaCG----------AGACGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 62903 0.67 0.813374
Target:  5'- aGCGGGUGGcgcggGUGCUCggggcccGCGGGCGg-- -3'
miRNA:   3'- gCGUUCACC-----UACGAGa------CGCUCGCgcu -5'
6364 5' -56.1 NC_001847.1 + 58088 0.67 0.81689
Target:  5'- cCGC-AGcGGGUGCcgcgccgcuacuacuUCUGCG-GCGCGGc -3'
miRNA:   3'- -GCGuUCaCCUACG---------------AGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 49797 0.66 0.885011
Target:  5'- aCGCccccGGGUGCgcugCUGCuGGGCGCGc -3'
miRNA:   3'- -GCGuucaCCUACGa---GACG-CUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 78850 0.66 0.877893
Target:  5'- gGCGAGUagcuGGuGUGCUC-GCGGuGCGCGc -3'
miRNA:   3'- gCGUUCA----CC-UACGAGaCGCU-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 120777 0.66 0.87055
Target:  5'- cCGCGGccGUGGca--UCUGCGAGCGuCGGc -3'
miRNA:   3'- -GCGUU--CACCuacgAGACGCUCGC-GCU- -5'
6364 5' -56.1 NC_001847.1 + 22481 0.66 0.863753
Target:  5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3'
miRNA:   3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 51213 0.66 0.855212
Target:  5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3'
miRNA:   3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 90157 0.67 0.84723
Target:  5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3'
miRNA:   3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5'
6364 5' -56.1 NC_001847.1 + 127733 0.67 0.822112
Target:  5'- gGCAAGccgccGGUGCcgUCUGcCGAGCGCGc -3'
miRNA:   3'- gCGUUCac---CUACG--AGAC-GCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 134194 0.67 0.822112
Target:  5'- gCGCAGcGUGGA-GCg--GCGcGCGCGGg -3'
miRNA:   3'- -GCGUU-CACCUaCGagaCGCuCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.