miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 70698 0.72 0.564039
Target:  5'- cCGCGGGcGGcgGCgggggCgcccgcgGCGAGCGCGAg -3'
miRNA:   3'- -GCGUUCaCCuaCGa----Ga------CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 90157 0.67 0.84723
Target:  5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3'
miRNA:   3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5'
6364 5' -56.1 NC_001847.1 + 51213 0.66 0.855212
Target:  5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3'
miRNA:   3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 22481 0.66 0.863753
Target:  5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3'
miRNA:   3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 78850 0.66 0.877893
Target:  5'- gGCGAGUagcuGGuGUGCUC-GCGGuGCGCGc -3'
miRNA:   3'- gCGUUCA----CC-UACGAGaCGCU-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 61317 0.67 0.804469
Target:  5'- gCGCGGGUGcgcGggGCgggGCGGGCGCGc -3'
miRNA:   3'- -GCGUUCAC---CuaCGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 55502 0.68 0.795403
Target:  5'- gGC-AGUGGuucgGCg--GCGAGCGCGu -3'
miRNA:   3'- gCGuUCACCua--CGagaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 32007 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 64209 0.71 0.594808
Target:  5'- gCGCGGGUcgGGGUGCcCggGCGgcGGCGCGAa -3'
miRNA:   3'- -GCGUUCA--CCUACGaGa-CGC--UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 20071 0.71 0.605129
Target:  5'- aGCGGcGUGGcgGCUCccGCG-GCGCGGc -3'
miRNA:   3'- gCGUU-CACCuaCGAGa-CGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 93752 0.71 0.625827
Target:  5'- gCGCGGuccgGGAgcgGCUgaGCGAGCGUGAc -3'
miRNA:   3'- -GCGUUca--CCUa--CGAgaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 112099 0.7 0.636187
Target:  5'- gCGCAAgGUGGAcugGCUCgaGCG-GCGCGu -3'
miRNA:   3'- -GCGUU-CACCUa--CGAGa-CGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 56341 0.7 0.667214
Target:  5'- gGCGAaggGGuccacAUGCUCcGCGGGCGCGGg -3'
miRNA:   3'- gCGUUca-CC-----UACGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 3286 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 41639 0.7 0.675454
Target:  5'- gGCGAGUGGGUGCggauccaccCGAcGCGCGGc -3'
miRNA:   3'- gCGUUCACCUACGagac-----GCU-CGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 71863 0.69 0.71822
Target:  5'- aGC-GGUGGAaGCggCcGCGAGCGCGc -3'
miRNA:   3'- gCGuUCACCUaCGa-GaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 37113 0.69 0.728233
Target:  5'- cCGCuGGUGuucAUGCUCUG-GGGCGCGc -3'
miRNA:   3'- -GCGuUCACc--UACGAGACgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 30579 0.69 0.737171
Target:  5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3'
miRNA:   3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 57086 0.69 0.73816
Target:  5'- gCGCcgucGUGGccGCgagggGCGAGCGCGAg -3'
miRNA:   3'- -GCGuu--CACCuaCGaga--CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 115676 0.69 0.73816
Target:  5'- uGCGGGUGaGcgGCUgcGCGGGgGCGAg -3'
miRNA:   3'- gCGUUCAC-CuaCGAgaCGCUCgCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.