miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 134820 0.68 0.767336
Target:  5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3'
miRNA:   3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 134194 0.67 0.822112
Target:  5'- gCGCAGcGUGGA-GCg--GCGcGCGCGGg -3'
miRNA:   3'- -GCGUU-CACCUaCGagaCGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 133392 0.69 0.737171
Target:  5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3'
miRNA:   3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 133187 0.69 0.73816
Target:  5'- gCGCGGGcugcccucgcUGGAggaGCUCUGCGccGCGCGc -3'
miRNA:   3'- -GCGUUC----------ACCUa--CGAGACGCu-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 127733 0.67 0.822112
Target:  5'- gGCAAGccgccGGUGCcgUCUGcCGAGCGCGc -3'
miRNA:   3'- gCGUUCac---CUACG--AGAC-GCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 125465 0.74 0.437676
Target:  5'- gGCGGGUcGGcggcaGCUCgcgGCGGGCGCGAg -3'
miRNA:   3'- gCGUUCA-CCua---CGAGa--CGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 125294 0.66 0.863753
Target:  5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3'
miRNA:   3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 120777 0.66 0.87055
Target:  5'- cCGCGGccGUGGca--UCUGCGAGCGuCGGc -3'
miRNA:   3'- -GCGUU--CACCuacgAGACGCUCGC-GCU- -5'
6364 5' -56.1 NC_001847.1 + 119551 0.67 0.804469
Target:  5'- gGCAAG-GGgcGCgcggccagacUCUGCGGGCaGCGGc -3'
miRNA:   3'- gCGUUCaCCuaCG----------AGACGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 119026 0.68 0.757721
Target:  5'- cCGCAGGUGGG-GCgcacgCUGUGGGaaGCGGu -3'
miRNA:   3'- -GCGUUCACCUaCGa----GACGCUCg-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 117383 1.09 0.00224
Target:  5'- gCGCAAGUGGAUGCUCUGCGAGCGCGAg -3'
miRNA:   3'- -GCGUUCACCUACGAGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 116676 0.76 0.344473
Target:  5'- uGCGuGUGGGUccgGCgCUGCGGGCGCGGc -3'
miRNA:   3'- gCGUuCACCUA---CGaGACGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 116571 0.66 0.887794
Target:  5'- gCGCAcGUGGGcaucugcgcucUgggcgcagcgcugccGCUCUGCG-GCGCGGa -3'
miRNA:   3'- -GCGUuCACCU-----------A---------------CGAGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 115676 0.69 0.73816
Target:  5'- uGCGGGUGaGcgGCUgcGCGGGgGCGAg -3'
miRNA:   3'- gCGUUCAC-CuaCGAgaCGCUCgCGCU- -5'
6364 5' -56.1 NC_001847.1 + 112099 0.7 0.636187
Target:  5'- gCGCAAgGUGGAcugGCUCgaGCG-GCGCGu -3'
miRNA:   3'- -GCGUU-CACCUa--CGAGa-CGCuCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 106099 0.7 0.687768
Target:  5'- gGCGAGcacGGcgcgcaGCUCgGCGAGCGCGGc -3'
miRNA:   3'- gCGUUCa--CCua----CGAGaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 100508 0.68 0.776827
Target:  5'- gGCGgugcGGUGuGGUGggCUGCGGGuCGCGGa -3'
miRNA:   3'- gCGU----UCAC-CUACgaGACGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 96315 0.68 0.786186
Target:  5'- cCGCGGG-GGAUcGCUCggugucgGUGGGCgGCGGg -3'
miRNA:   3'- -GCGUUCaCCUA-CGAGa------CGCUCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 93752 0.71 0.625827
Target:  5'- gCGCGGuccgGGAgcgGCUgaGCGAGCGUGAc -3'
miRNA:   3'- -GCGUUca--CCUa--CGAgaCGCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 90157 0.67 0.84723
Target:  5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3'
miRNA:   3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.