miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 3' -48.9 NC_001847.1 + 76176 0.68 0.990641
Target:  5'- cGCGGAUGCCCUgcgagacgcaaauaaUAGAAaaagaggcGUGAgcagcgcgcgUGCCGa -3'
miRNA:   3'- uUGCCUGCGGGA---------------AUUUU--------UACU----------ACGGC- -5'
6365 3' -48.9 NC_001847.1 + 74350 0.68 0.987086
Target:  5'- uGGCGGGCGCCacc-AAGGUGGgcUGCUGc -3'
miRNA:   3'- -UUGCCUGCGGgaauUUUUACU--ACGGC- -5'
6365 3' -48.9 NC_001847.1 + 33398 0.68 0.987086
Target:  5'- gAGCuGGACGCCgUgcuGAGUGAcgugGCCGc -3'
miRNA:   3'- -UUG-CCUGCGGgAauuUUUACUa---CGGC- -5'
6365 3' -48.9 NC_001847.1 + 121807 0.68 0.986229
Target:  5'- cGCGGGCGCCUgcucgccgcccGUGCCGg -3'
miRNA:   3'- uUGCCUGCGGGaauuuuuac--UACGGC- -5'
6365 3' -48.9 NC_001847.1 + 40392 0.68 0.985145
Target:  5'- cGACGGccccggccaagacGCGCCCaaagcccGAGUGGUGCCu -3'
miRNA:   3'- -UUGCC-------------UGCGGGaauu---UUUACUACGGc -5'
6365 3' -48.9 NC_001847.1 + 2200 0.69 0.981278
Target:  5'- uGCGGGCGCaCCUcaaacaugcggUAGAGGUcGcgGCCGu -3'
miRNA:   3'- uUGCCUGCG-GGA-----------AUUUUUA-CuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 54601 0.69 0.98083
Target:  5'- uGGCGGcgcGCGCCCgcgcc---GAUGCCGa -3'
miRNA:   3'- -UUGCC---UGCGGGaauuuuuaCUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 31883 0.69 0.976441
Target:  5'- cGGCGGA-GCCCgucgcGcgGAUGCCGc -3'
miRNA:   3'- -UUGCCUgCGGGaauuuUuaCUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 123224 0.69 0.976441
Target:  5'- --gGGAC-CCgCUUGAAGAcGAUGCCGc -3'
miRNA:   3'- uugCCUGcGG-GAAUUUUUaCUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 89900 0.69 0.973704
Target:  5'- gGACGcGGCGCCC---GAGGUuGUGCCGc -3'
miRNA:   3'- -UUGC-CUGCGGGaauUUUUAcUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 12048 0.69 0.970745
Target:  5'- -cUGGACGCCCUgcgcgcuGcgGAcGCCGa -3'
miRNA:   3'- uuGCCUGCGGGAauuu---UuaCUaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 57540 0.7 0.967554
Target:  5'- cAGCGG-CGCCgCcaGAAAcgGGUGCCGc -3'
miRNA:   3'- -UUGCCuGCGG-GaaUUUUuaCUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 11951 0.7 0.967554
Target:  5'- cAUGGACGCCgcUAGGGAUGGgcgGCUGa -3'
miRNA:   3'- uUGCCUGCGGgaAUUUUUACUa--CGGC- -5'
6365 3' -48.9 NC_001847.1 + 21022 0.7 0.967554
Target:  5'- uGCGGGCGaCCCUgcgcagagAGAGAUGggGCUc -3'
miRNA:   3'- uUGCCUGC-GGGAa-------UUUUUACuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 76869 0.7 0.964124
Target:  5'- --aGGGCGCCCUgccgugcccGGGUGgcGCCGa -3'
miRNA:   3'- uugCCUGCGGGAauu------UUUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 49711 0.7 0.964124
Target:  5'- gGGCGcGGCGCCCgUGcAAGUGGgcGCCGg -3'
miRNA:   3'- -UUGC-CUGCGGGaAUuUUUACUa-CGGC- -5'
6365 3' -48.9 NC_001847.1 + 122843 0.7 0.956519
Target:  5'- -cCGGgcccGCGCCCUggcuuGUGGUGCUGg -3'
miRNA:   3'- uuGCC----UGCGGGAauuuuUACUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 130184 0.7 0.956519
Target:  5'- cGCGGGCGCCCggccUGAAGAgacggGcgGCgCGg -3'
miRNA:   3'- uUGCCUGCGGGa---AUUUUUa----CuaCG-GC- -5'
6365 3' -48.9 NC_001847.1 + 52929 0.72 0.915526
Target:  5'- --gGGGCGCCCgcGAAGGccGUGCCGg -3'
miRNA:   3'- uugCCUGCGGGaaUUUUUacUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 85973 0.74 0.85742
Target:  5'- cAGCGGACGCCCggcgcgUGAccGUGGUccgcgcGCCGa -3'
miRNA:   3'- -UUGCCUGCGGGa-----AUUuuUACUA------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.