Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6365 | 3' | -48.9 | NC_001847.1 | + | 52929 | 0.72 | 0.915526 |
Target: 5'- --gGGGCGCCCgcGAAGGccGUGCCGg -3' miRNA: 3'- uugCCUGCGGGaaUUUUUacUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 54601 | 0.69 | 0.98083 |
Target: 5'- uGGCGGcgcGCGCCCgcgcc---GAUGCCGa -3' miRNA: 3'- -UUGCC---UGCGGGaauuuuuaCUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 57540 | 0.7 | 0.967554 |
Target: 5'- cAGCGG-CGCCgCcaGAAAcgGGUGCCGc -3' miRNA: 3'- -UUGCCuGCGG-GaaUUUUuaCUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 62491 | 0.66 | 0.997139 |
Target: 5'- cGGCGGGCGgCCgc-GGGGUGGcgGCCa -3' miRNA: 3'- -UUGCCUGCgGGaauUUUUACUa-CGGc -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 66323 | 0.66 | 0.995987 |
Target: 5'- cGCGG-CGCCCUgcgGcgGGUGggGCgCGg -3' miRNA: 3'- uUGCCuGCGGGAa--UuuUUACuaCG-GC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 70474 | 0.76 | 0.723148 |
Target: 5'- cGCGGGCGCCCggu-GGAUGGcgUGCUGg -3' miRNA: 3'- uUGCCUGCGGGaauuUUUACU--ACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 72331 | 0.67 | 0.992547 |
Target: 5'- cGCGGACGCgCUgc----UGGUGCUGc -3' miRNA: 3'- uUGCCUGCGgGAauuuuuACUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 74115 | 0.67 | 0.994481 |
Target: 5'- gGGCGGccGCGCCCggGGAuGUGAcGCgCGg -3' miRNA: 3'- -UUGCC--UGCGGGaaUUUuUACUaCG-GC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 74350 | 0.68 | 0.987086 |
Target: 5'- uGGCGGGCGCCacc-AAGGUGGgcUGCUGc -3' miRNA: 3'- -UUGCCUGCGGgaauUUUUACU--ACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 74445 | 0.75 | 0.813367 |
Target: 5'- cAACGGGCGCCgCUaccAGGUGAcGCCGg -3' miRNA: 3'- -UUGCCUGCGG-GAauuUUUACUaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 76176 | 0.68 | 0.990641 |
Target: 5'- cGCGGAUGCCCUgcgagacgcaaauaaUAGAAaaagaggcGUGAgcagcgcgcgUGCCGa -3' miRNA: 3'- uUGCCUGCGGGA---------------AUUUU--------UACU----------ACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 76869 | 0.7 | 0.964124 |
Target: 5'- --aGGGCGCCCUgccgugcccGGGUGgcGCCGa -3' miRNA: 3'- uugCCUGCGGGAauu------UUUACuaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 85973 | 0.74 | 0.85742 |
Target: 5'- cAGCGGACGCCCggcgcgUGAccGUGGUccgcgcGCCGa -3' miRNA: 3'- -UUGCCUGCGGGa-----AUUuuUACUA------CGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 89712 | 0.67 | 0.994732 |
Target: 5'- cGACGGGCGCCCUgggcucaa--GCCu -3' miRNA: 3'- -UUGCCUGCGGGAauuuuuacuaCGGc -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 89900 | 0.69 | 0.973704 |
Target: 5'- gGACGcGGCGCCC---GAGGUuGUGCCGc -3' miRNA: 3'- -UUGC-CUGCGGGaauUUUUAcUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 116865 | 0.91 | 0.143863 |
Target: 5'- aAACGGACGCCCUUAAAAAUGuaGCCGc -3' miRNA: 3'- -UUGCCUGCGGGAAUUUUUACuaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 117430 | 0.66 | 0.996603 |
Target: 5'- cGCGGcuGCGCCCUggcccucuUGGAcauggcggagacGGUGGUGCCc -3' miRNA: 3'- uUGCC--UGCGGGA--------AUUU------------UUACUACGGc -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 120559 | 0.67 | 0.995283 |
Target: 5'- aGACGG-CGUCCUUAGAGA----GCCGc -3' miRNA: 3'- -UUGCCuGCGGGAAUUUUUacuaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 121807 | 0.68 | 0.986229 |
Target: 5'- cGCGGGCGCCUgcucgccgcccGUGCCGg -3' miRNA: 3'- uUGCCUGCGGGaauuuuuac--UACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 122843 | 0.7 | 0.956519 |
Target: 5'- -cCGGgcccGCGCCCUggcuuGUGGUGCUGg -3' miRNA: 3'- uuGCC----UGCGGGAauuuuUACUACGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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