miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 3' -48.9 NC_001847.1 + 2200 0.69 0.981278
Target:  5'- uGCGGGCGCaCCUcaaacaugcggUAGAGGUcGcgGCCGu -3'
miRNA:   3'- uUGCCUGCG-GGA-----------AUUUUUA-CuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 4820 0.79 0.56042
Target:  5'- cGCGcGAUGCCCUUGAGcGUGggGCCGc -3'
miRNA:   3'- uUGC-CUGCGGGAAUUUuUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 6744 0.67 0.991396
Target:  5'- uAGCGGGCGUCgUcuGcgGUGcgGCCGg -3'
miRNA:   3'- -UUGCCUGCGGgAauUuuUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 11951 0.7 0.967554
Target:  5'- cAUGGACGCCgcUAGGGAUGGgcgGCUGa -3'
miRNA:   3'- uUGCCUGCGGgaAUUUUUACUa--CGGC- -5'
6365 3' -48.9 NC_001847.1 + 12048 0.69 0.970745
Target:  5'- -cUGGACGCCCUgcgcgcuGcgGAcGCCGa -3'
miRNA:   3'- uuGCCUGCGGGAauuu---UuaCUaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 12582 0.66 0.998002
Target:  5'- uACGcGGCGCCCUcgcacucGUGcgGCCa -3'
miRNA:   3'- uUGC-CUGCGGGAauuuu--UACuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 14820 0.66 0.99777
Target:  5'- uGCGcGGCGCCCUgcgcgcggUGGAAaaguauauguauuacAUGcgGCCGg -3'
miRNA:   3'- uUGC-CUGCGGGA--------AUUUU---------------UACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 16996 0.67 0.992547
Target:  5'- --aGGACGUCCUUGGcAAcGgcGCCGa -3'
miRNA:   3'- uugCCUGCGGGAAUUuUUaCuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 21022 0.7 0.967554
Target:  5'- uGCGGGCGaCCCUgcgcagagAGAGAUGggGCUc -3'
miRNA:   3'- uUGCCUGC-GGGAa-------UUUUUACuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 27534 0.66 0.998002
Target:  5'- --gGGACGCCCga-GAAcgGcgGCgCGg -3'
miRNA:   3'- uugCCUGCGGGaauUUUuaCuaCG-GC- -5'
6365 3' -48.9 NC_001847.1 + 30315 0.66 0.996427
Target:  5'- uGCGGACGCCCgcccccccgGcgGCgGg -3'
miRNA:   3'- uUGCCUGCGGGaauuuuua-CuaCGgC- -5'
6365 3' -48.9 NC_001847.1 + 31357 0.67 0.992867
Target:  5'- cGGCGGAaGCCCcgccggcccgGGUGCCGg -3'
miRNA:   3'- -UUGCCUgCGGGaauuuuua--CUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 31883 0.69 0.976441
Target:  5'- cGGCGGA-GCCCgucgcGcgGAUGCCGc -3'
miRNA:   3'- -UUGCCUgCGGGaauuuUuaCUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 33398 0.68 0.987086
Target:  5'- gAGCuGGACGCCgUgcuGAGUGAcgugGCCGc -3'
miRNA:   3'- -UUG-CCUGCGGgAauuUUUACUa---CGGC- -5'
6365 3' -48.9 NC_001847.1 + 34364 0.67 0.992547
Target:  5'- cGGCGGGCGCU------GAUGcgGCCGa -3'
miRNA:   3'- -UUGCCUGCGGgaauuuUUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 37550 0.66 0.995987
Target:  5'- cGACGGGCgGCCCUUcgGAAGAcGcgGCgGc -3'
miRNA:   3'- -UUGCCUG-CGGGAA--UUUUUaCuaCGgC- -5'
6365 3' -48.9 NC_001847.1 + 40392 0.68 0.985145
Target:  5'- cGACGGccccggccaagacGCGCCCaaagcccGAGUGGUGCCu -3'
miRNA:   3'- -UUGCC-------------UGCGGGaauu---UUUACUACGGc -5'
6365 3' -48.9 NC_001847.1 + 49573 0.66 0.997603
Target:  5'- cGACGG-CGCCgUUGAGAcgacgGCCGa -3'
miRNA:   3'- -UUGCCuGCGGgAAUUUUuacuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 49711 0.7 0.964124
Target:  5'- gGGCGcGGCGCCCgUGcAAGUGGgcGCCGg -3'
miRNA:   3'- -UUGC-CUGCGGGaAUuUUUACUa-CGGC- -5'
6365 3' -48.9 NC_001847.1 + 52047 0.66 0.995987
Target:  5'- aGGCGGAgGCCCgcccGGAGGUGuggGCgGg -3'
miRNA:   3'- -UUGCCUgCGGGaa--UUUUUACua-CGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.