miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 3' -48.9 NC_001847.1 + 134170 0.67 0.992867
Target:  5'- cGGCGGAaGCCCcgccggcccgGGUGCCGg -3'
miRNA:   3'- -UUGCCUgCGGGaauuuuua--CUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 130184 0.7 0.956519
Target:  5'- cGCGGGCGCCCggccUGAAGAgacggGcgGCgCGg -3'
miRNA:   3'- uUGCCUGCGGGa---AUUUUUa----CuaCG-GC- -5'
6365 3' -48.9 NC_001847.1 + 123638 0.66 0.998002
Target:  5'- gGGCGG-CGCCCUUGGcuGAA-GgcGCCu -3'
miRNA:   3'- -UUGCCuGCGGGAAUU--UUUaCuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 123224 0.69 0.976441
Target:  5'- --gGGAC-CCgCUUGAAGAcGAUGCCGc -3'
miRNA:   3'- uugCCUGcGG-GAAUUUUUaCUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 122843 0.7 0.956519
Target:  5'- -cCGGgcccGCGCCCUggcuuGUGGUGCUGg -3'
miRNA:   3'- uuGCC----UGCGGGAauuuuUACUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 121807 0.68 0.986229
Target:  5'- cGCGGGCGCCUgcucgccgcccGUGCCGg -3'
miRNA:   3'- uUGCCUGCGGGaauuuuuac--UACGGC- -5'
6365 3' -48.9 NC_001847.1 + 120559 0.67 0.995283
Target:  5'- aGACGG-CGUCCUUAGAGA----GCCGc -3'
miRNA:   3'- -UUGCCuGCGGGAAUUUUUacuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 117430 0.66 0.996603
Target:  5'- cGCGGcuGCGCCCUggcccucuUGGAcauggcggagacGGUGGUGCCc -3'
miRNA:   3'- uUGCC--UGCGGGA--------AUUU------------UUACUACGGc -5'
6365 3' -48.9 NC_001847.1 + 116865 0.91 0.143863
Target:  5'- aAACGGACGCCCUUAAAAAUGuaGCCGc -3'
miRNA:   3'- -UUGCCUGCGGGAAUUUUUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 89900 0.69 0.973704
Target:  5'- gGACGcGGCGCCC---GAGGUuGUGCCGc -3'
miRNA:   3'- -UUGC-CUGCGGGaauUUUUAcUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 89712 0.67 0.994732
Target:  5'- cGACGGGCGCCCUgggcucaa--GCCu -3'
miRNA:   3'- -UUGCCUGCGGGAauuuuuacuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 85973 0.74 0.85742
Target:  5'- cAGCGGACGCCCggcgcgUGAccGUGGUccgcgcGCCGa -3'
miRNA:   3'- -UUGCCUGCGGGa-----AUUuuUACUA------CGGC- -5'
6365 3' -48.9 NC_001847.1 + 76869 0.7 0.964124
Target:  5'- --aGGGCGCCCUgccgugcccGGGUGgcGCCGa -3'
miRNA:   3'- uugCCUGCGGGAauu------UUUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 76176 0.68 0.990641
Target:  5'- cGCGGAUGCCCUgcgagacgcaaauaaUAGAAaaagaggcGUGAgcagcgcgcgUGCCGa -3'
miRNA:   3'- uUGCCUGCGGGA---------------AUUUU--------UACU----------ACGGC- -5'
6365 3' -48.9 NC_001847.1 + 74445 0.75 0.813367
Target:  5'- cAACGGGCGCCgCUaccAGGUGAcGCCGg -3'
miRNA:   3'- -UUGCCUGCGG-GAauuUUUACUaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 74350 0.68 0.987086
Target:  5'- uGGCGGGCGCCacc-AAGGUGGgcUGCUGc -3'
miRNA:   3'- -UUGCCUGCGGgaauUUUUACU--ACGGC- -5'
6365 3' -48.9 NC_001847.1 + 74115 0.67 0.994481
Target:  5'- gGGCGGccGCGCCCggGGAuGUGAcGCgCGg -3'
miRNA:   3'- -UUGCC--UGCGGGaaUUUuUACUaCG-GC- -5'
6365 3' -48.9 NC_001847.1 + 72331 0.67 0.992547
Target:  5'- cGCGGACGCgCUgc----UGGUGCUGc -3'
miRNA:   3'- uUGCCUGCGgGAauuuuuACUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 70474 0.76 0.723148
Target:  5'- cGCGGGCGCCCggu-GGAUGGcgUGCUGg -3'
miRNA:   3'- uUGCCUGCGGGaauuUUUACU--ACGGC- -5'
6365 3' -48.9 NC_001847.1 + 66323 0.66 0.995987
Target:  5'- cGCGG-CGCCCUgcgGcgGGUGggGCgCGg -3'
miRNA:   3'- uUGCCuGCGGGAa--UuuUUACuaCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.