miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 3' -48.9 NC_001847.1 + 27534 0.66 0.998002
Target:  5'- --gGGACGCCCga-GAAcgGcgGCgCGg -3'
miRNA:   3'- uugCCUGCGGGaauUUUuaCuaCG-GC- -5'
6365 3' -48.9 NC_001847.1 + 37550 0.66 0.995987
Target:  5'- cGACGGGCgGCCCUUcgGAAGAcGcgGCgGc -3'
miRNA:   3'- -UUGCCUG-CGGGAA--UUUUUaCuaCGgC- -5'
6365 3' -48.9 NC_001847.1 + 14820 0.66 0.99777
Target:  5'- uGCGcGGCGCCCUgcgcgcggUGGAAaaguauauguauuacAUGcgGCCGg -3'
miRNA:   3'- uUGC-CUGCGGGA--------AUUUU---------------UACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 52047 0.66 0.995987
Target:  5'- aGGCGGAgGCCCgcccGGAGGUGuggGCgGg -3'
miRNA:   3'- -UUGCCUgCGGGaa--UUUUUACua-CGgC- -5'
6365 3' -48.9 NC_001847.1 + 66323 0.66 0.995987
Target:  5'- cGCGG-CGCCCUgcgGcgGGUGggGCgCGg -3'
miRNA:   3'- uUGCCuGCGGGAa--UuuUUACuaCG-GC- -5'
6365 3' -48.9 NC_001847.1 + 30315 0.66 0.996427
Target:  5'- uGCGGACGCCCgcccccccgGcgGCgGg -3'
miRNA:   3'- uUGCCUGCGGGaauuuuua-CuaCGgC- -5'
6365 3' -48.9 NC_001847.1 + 117430 0.66 0.996603
Target:  5'- cGCGGcuGCGCCCUggcccucuUGGAcauggcggagacGGUGGUGCCc -3'
miRNA:   3'- uUGCC--UGCGGGA--------AUUU------------UUACUACGGc -5'
6365 3' -48.9 NC_001847.1 + 123638 0.66 0.998002
Target:  5'- gGGCGG-CGCCCUUGGcuGAA-GgcGCCu -3'
miRNA:   3'- -UUGCCuGCGGGAAUU--UUUaCuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 62491 0.66 0.997139
Target:  5'- cGGCGGGCGgCCgc-GGGGUGGcgGCCa -3'
miRNA:   3'- -UUGCCUGCgGGaauUUUUACUa-CGGc -5'
6365 3' -48.9 NC_001847.1 + 49573 0.66 0.997603
Target:  5'- cGACGG-CGCCgUUGAGAcgacgGCCGa -3'
miRNA:   3'- -UUGCCuGCGGgAAUUUUuacuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 12582 0.66 0.998002
Target:  5'- uACGcGGCGCCCUcgcacucGUGcgGCCa -3'
miRNA:   3'- uUGC-CUGCGGGAauuuu--UACuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 34364 0.67 0.992547
Target:  5'- cGGCGGGCGCU------GAUGcgGCCGa -3'
miRNA:   3'- -UUGCCUGCGGgaauuuUUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 134170 0.67 0.992867
Target:  5'- cGGCGGAaGCCCcgccggcccgGGUGCCGg -3'
miRNA:   3'- -UUGCCUgCGGGaauuuuua--CUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 16996 0.67 0.992547
Target:  5'- --aGGACGUCCUUGGcAAcGgcGCCGa -3'
miRNA:   3'- uugCCUGCGGGAAUUuUUaCuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 31357 0.67 0.992867
Target:  5'- cGGCGGAaGCCCcgccggcccgGGUGCCGg -3'
miRNA:   3'- -UUGCCUgCGGGaauuuuua--CUACGGC- -5'
6365 3' -48.9 NC_001847.1 + 89712 0.67 0.994732
Target:  5'- cGACGGGCGCCCUgggcucaa--GCCu -3'
miRNA:   3'- -UUGCCUGCGGGAauuuuuacuaCGGc -5'
6365 3' -48.9 NC_001847.1 + 74115 0.67 0.994481
Target:  5'- gGGCGGccGCGCCCggGGAuGUGAcGCgCGg -3'
miRNA:   3'- -UUGCC--UGCGGGaaUUUuUACUaCG-GC- -5'
6365 3' -48.9 NC_001847.1 + 6744 0.67 0.991396
Target:  5'- uAGCGGGCGUCgUcuGcgGUGcgGCCGg -3'
miRNA:   3'- -UUGCCUGCGGgAauUuuUACuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 120559 0.67 0.995283
Target:  5'- aGACGG-CGUCCUUAGAGA----GCCGc -3'
miRNA:   3'- -UUGCCuGCGGGAAUUUUUacuaCGGC- -5'
6365 3' -48.9 NC_001847.1 + 72331 0.67 0.992547
Target:  5'- cGCGGACGCgCUgc----UGGUGCUGc -3'
miRNA:   3'- uUGCCUGCGgGAauuuuuACUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.