Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6365 | 3' | -48.9 | NC_001847.1 | + | 76176 | 0.68 | 0.990641 |
Target: 5'- cGCGGAUGCCCUgcgagacgcaaauaaUAGAAaaagaggcGUGAgcagcgcgcgUGCCGa -3' miRNA: 3'- uUGCCUGCGGGA---------------AUUUU--------UACU----------ACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 12048 | 0.69 | 0.970745 |
Target: 5'- -cUGGACGCCCUgcgcgcuGcgGAcGCCGa -3' miRNA: 3'- uuGCCUGCGGGAauuu---UuaCUaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 11951 | 0.7 | 0.967554 |
Target: 5'- cAUGGACGCCgcUAGGGAUGGgcgGCUGa -3' miRNA: 3'- uUGCCUGCGGgaAUUUUUACUa--CGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 21022 | 0.7 | 0.967554 |
Target: 5'- uGCGGGCGaCCCUgcgcagagAGAGAUGggGCUc -3' miRNA: 3'- uUGCCUGC-GGGAa-------UUUUUACuaCGGc -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 49711 | 0.7 | 0.964124 |
Target: 5'- gGGCGcGGCGCCCgUGcAAGUGGgcGCCGg -3' miRNA: 3'- -UUGC-CUGCGGGaAUuUUUACUa-CGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 122843 | 0.7 | 0.956519 |
Target: 5'- -cCGGgcccGCGCCCUggcuuGUGGUGCUGg -3' miRNA: 3'- uuGCC----UGCGGGAauuuuUACUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 85973 | 0.74 | 0.85742 |
Target: 5'- cAGCGGACGCCCggcgcgUGAccGUGGUccgcgcGCCGa -3' miRNA: 3'- -UUGCCUGCGGGa-----AUUuuUACUA------CGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 74445 | 0.75 | 0.813367 |
Target: 5'- cAACGGGCGCCgCUaccAGGUGAcGCCGg -3' miRNA: 3'- -UUGCCUGCGG-GAauuUUUACUaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 70474 | 0.76 | 0.723148 |
Target: 5'- cGCGGGCGCCCggu-GGAUGGcgUGCUGg -3' miRNA: 3'- uUGCCUGCGGGaauuUUUACU--ACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 4820 | 0.79 | 0.56042 |
Target: 5'- cGCGcGAUGCCCUUGAGcGUGggGCCGc -3' miRNA: 3'- uUGC-CUGCGGGAAUUUuUACuaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 89900 | 0.69 | 0.973704 |
Target: 5'- gGACGcGGCGCCC---GAGGUuGUGCCGc -3' miRNA: 3'- -UUGC-CUGCGGGaauUUUUAcUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 54601 | 0.69 | 0.98083 |
Target: 5'- uGGCGGcgcGCGCCCgcgcc---GAUGCCGa -3' miRNA: 3'- -UUGCC---UGCGGGaauuuuuaCUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 123224 | 0.69 | 0.976441 |
Target: 5'- --gGGAC-CCgCUUGAAGAcGAUGCCGc -3' miRNA: 3'- uugCCUGcGG-GAAUUUUUaCUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 40392 | 0.68 | 0.985145 |
Target: 5'- cGACGGccccggccaagacGCGCCCaaagcccGAGUGGUGCCu -3' miRNA: 3'- -UUGCC-------------UGCGGGaauu---UUUACUACGGc -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 33398 | 0.68 | 0.987086 |
Target: 5'- gAGCuGGACGCCgUgcuGAGUGAcgugGCCGc -3' miRNA: 3'- -UUG-CCUGCGGgAauuUUUACUa---CGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 31883 | 0.69 | 0.976441 |
Target: 5'- cGGCGGA-GCCCgucgcGcgGAUGCCGc -3' miRNA: 3'- -UUGCCUgCGGGaauuuUuaCUACGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 6744 | 0.67 | 0.991396 |
Target: 5'- uAGCGGGCGUCgUcuGcgGUGcgGCCGg -3' miRNA: 3'- -UUGCCUGCGGgAauUuuUACuaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 27534 | 0.66 | 0.998002 |
Target: 5'- --gGGACGCCCga-GAAcgGcgGCgCGg -3' miRNA: 3'- uugCCUGCGGGaauUUUuaCuaCG-GC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 2200 | 0.69 | 0.981278 |
Target: 5'- uGCGGGCGCaCCUcaaacaugcggUAGAGGUcGcgGCCGu -3' miRNA: 3'- uUGCCUGCG-GGA-----------AUUUUUA-CuaCGGC- -5' |
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6365 | 3' | -48.9 | NC_001847.1 | + | 121807 | 0.68 | 0.986229 |
Target: 5'- cGCGGGCGCCUgcucgccgcccGUGCCGg -3' miRNA: 3'- uUGCCUGCGGGaauuuuuac--UACGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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