miRNA display CGI


Results 61 - 80 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 23031 0.68 0.688978
Target:  5'- cCGCGGCCAcgcgccgcUCgagccaGUCCACCUuGCGCc -3'
miRNA:   3'- -GCGCCGGU--------AGaacc--UAGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 23809 0.69 0.638812
Target:  5'- gGCGGCCAccgaccacugcUCgc-GGUCCAgCgCGCGCa -3'
miRNA:   3'- gCGCCGGU-----------AGaacCUAGGUgG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 24109 0.66 0.802613
Target:  5'- uCGUaGCCGUCgaacGGcAUgaGCCCGCGCg -3'
miRNA:   3'- -GCGcCGGUAGaa--CC-UAggUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 25135 0.69 0.63982
Target:  5'- gGCGGCCGcggCUgccuaaagccgaagcGGAUgaaCCGCCCGgGCg -3'
miRNA:   3'- gCGCCGGUa--GAa--------------CCUA---GGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 27619 0.72 0.444949
Target:  5'- gCGCGGCCAUCguuccucGUCCGCUCG-GCa -3'
miRNA:   3'- -GCGCCGGUAGaacc---UAGGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 27702 0.69 0.608587
Target:  5'- gCGCGagcGCCGgc--GGG-CCGCCCGCGCc -3'
miRNA:   3'- -GCGC---CGGUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27933 0.69 0.588509
Target:  5'- gGCGGCCGUCUcGaGuUCCuCCuCGCGUc -3'
miRNA:   3'- gCGCCGGUAGAaC-CuAGGuGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27988 0.66 0.802613
Target:  5'- cCGCGGCCGgggcGGAggCGgCCGCGg -3'
miRNA:   3'- -GCGCCGGUagaaCCUagGUgGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 28351 0.79 0.187641
Target:  5'- gCGCGGCCGUC----AUCCGCCCGCuGCu -3'
miRNA:   3'- -GCGCCGGUAGaaccUAGGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 28729 0.67 0.718594
Target:  5'- gCGCGGCCGcg--GGcagcgUCGCCgCGCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua---GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 28900 0.66 0.775648
Target:  5'- aCGCGGCCGccgUUUGGG---ACgCCGUGCa -3'
miRNA:   3'- -GCGCCGGUa--GAACCUaggUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 29179 0.69 0.638812
Target:  5'- gGCGGCCcgCc--GcgCCGCCgGCGCc -3'
miRNA:   3'- gCGCCGGuaGaacCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 29236 0.68 0.688978
Target:  5'- cCGCGGCCugcc-GGccgCgGCCUGCGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCua-GgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 29319 0.66 0.775648
Target:  5'- gCGCGGCCcgCgacgcggUGGA---GCgCGCGCg -3'
miRNA:   3'- -GCGCCGGuaGa------ACCUaggUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 29404 0.72 0.433395
Target:  5'- gGCGGCCGcgCUggcggcgcggaccgUGGccCCGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUa-GA--------------ACCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 29427 0.7 0.548773
Target:  5'- uGCGcGCCAgcgagcgCUggggcgUGGcgCCGCCCGCGg -3'
miRNA:   3'- gCGC-CGGUa------GA------ACCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 29505 0.66 0.802613
Target:  5'- cCGCGGgCGgcgCUUcGGccgcagagCuCGCCCGCGCg -3'
miRNA:   3'- -GCGCCgGUa--GAA-CCua------G-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 29536 0.69 0.588509
Target:  5'- gGCGGCCGcgCUcgcggcccUGGAggCCGCCgGCGg -3'
miRNA:   3'- gCGCCGGUa-GA--------ACCUa-GGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 29981 0.72 0.463054
Target:  5'- aCGCGGCCGggccggcgCggcgGGAgccgccgcugcCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGUa-------Gaa--CCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 30041 0.66 0.811313
Target:  5'- cCGCGGCCG---UGGGcgacgUUGCCgGCGCg -3'
miRNA:   3'- -GCGCCGGUagaACCUa----GGUGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.