miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 12971 0.67 0.708782
Target:  5'- gGUGGCCcgGUCgcUGGuucccucUCCucguCCCGCGCg -3'
miRNA:   3'- gCGCCGG--UAGa-ACCu------AGGu---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 13113 0.67 0.728334
Target:  5'- uCGCGGCCGgggCgcgcGGG-CgGCgCCGCGCc -3'
miRNA:   3'- -GCGCCGGUa--Gaa--CCUaGgUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 13939 0.72 0.463054
Target:  5'- cCGCGGCagg---GGggCCGcCCCGCGCa -3'
miRNA:   3'- -GCGCCGguagaaCCuaGGU-GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14064 0.78 0.197095
Target:  5'- uCGCGGCCGgugCUUGGG-CCGCUCGUGg -3'
miRNA:   3'- -GCGCCGGUa--GAACCUaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 14157 0.68 0.668991
Target:  5'- gGCGGCCG-CUaGGGcgaCGgCCGCGCu -3'
miRNA:   3'- gCGCCGGUaGAaCCUag-GUgGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14185 0.66 0.784772
Target:  5'- aCGCGGCg--C-UGGGUCCGCCCa--- -3'
miRNA:   3'- -GCGCCGguaGaACCUAGGUGGGcgcg -5'
6365 5' -58.6 NC_001847.1 + 14464 0.68 0.698907
Target:  5'- cCGCGGCC-UC-UGGGUCU--CCGgGCu -3'
miRNA:   3'- -GCGCCGGuAGaACCUAGGugGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 14506 0.67 0.737993
Target:  5'- aCGCGGCCAagggaaagacgUCUcGGcggcgcucgCUGCCCGCGg -3'
miRNA:   3'- -GCGCCGGU-----------AGAaCCua-------GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 14734 0.66 0.766399
Target:  5'- aCGCGGUCGUCUgcagcauaacGAagcagUCGCCCGCGg -3'
miRNA:   3'- -GCGCCGGUAGAac--------CUa----GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 15073 0.66 0.775648
Target:  5'- gGCGGCCcgg--GGAU-CGCCUGCGg -3'
miRNA:   3'- gCGCCGGuagaaCCUAgGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 15559 0.69 0.588509
Target:  5'- gCGCGGCCGUC--GGG-CCGCggCCGcCGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCCUaGGUG--GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 16469 0.69 0.612612
Target:  5'- cCGCGGCgCAgagcgcggacaccucUCUUGcg-CCuCCCGCGCg -3'
miRNA:   3'- -GCGCCG-GU---------------AGAACcuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 17746 0.67 0.708782
Target:  5'- gGCGGCCAcggccucgcgcUCgcaGAgcaUCCACuuGCGCu -3'
miRNA:   3'- gCGCCGGU-----------AGaacCU---AGGUGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 18230 0.67 0.708782
Target:  5'- gGCGGUCGUgCgcgcgggUGGAUCCAagauggCCGCGa -3'
miRNA:   3'- gCGCCGGUA-Ga------ACCUAGGUg-----GGCGCg -5'
6365 5' -58.6 NC_001847.1 + 18444 0.7 0.578513
Target:  5'- cCGCGGCCAgccgUGcGGUgCCgcGCCCGCaGCg -3'
miRNA:   3'- -GCGCCGGUaga-AC-CUA-GG--UGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 18602 0.68 0.688978
Target:  5'- aGCGcGCCGUCcgcGGcGUCgGCgCGCGCg -3'
miRNA:   3'- gCGC-CGGUAGaa-CC-UAGgUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 19346 0.69 0.628732
Target:  5'- cCGCGGCC-----GGGUCUugCgCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGGugG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 19444 0.71 0.519527
Target:  5'- cCGCGcGCCcgCUgccGGGccagccgcUCCGCCgCGCGCu -3'
miRNA:   3'- -GCGC-CGGuaGAa--CCU--------AGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 21357 0.66 0.802613
Target:  5'- uGCGcGCCGUCggcggcucGGG-CCGCCuCGgGCg -3'
miRNA:   3'- gCGC-CGGUAGaa------CCUaGGUGG-GCgCG- -5'
6365 5' -58.6 NC_001847.1 + 21743 0.69 0.618654
Target:  5'- gCGcCGGCCcgCgcgcgcgggGGggCCGCCgGCGCc -3'
miRNA:   3'- -GC-GCCGGuaGaa-------CCuaGGUGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.