miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 48776 0.71 0.519527
Target:  5'- cCGCGGCCcgccgccucGUCUgcgGGcgCCucGCCgGCGCc -3'
miRNA:   3'- -GCGCCGG---------UAGAa--CCuaGG--UGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36458 0.73 0.409969
Target:  5'- gCGCGGCUGUgUgagcgGGAccUgCACCUGCGCg -3'
miRNA:   3'- -GCGCCGGUAgAa----CCU--AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14064 0.78 0.197095
Target:  5'- uCGCGGCCGgugCUUGGG-CCGCUCGUGg -3'
miRNA:   3'- -GCGCCGGUa--GAACCUaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 93773 0.71 0.519527
Target:  5'- gGCGGCCcggccgccgCUUGGcugguUCCGCgcggCCGCGCg -3'
miRNA:   3'- gCGCCGGua-------GAACCu----AGGUG----GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 28351 0.79 0.187641
Target:  5'- gCGCGGCCGUC----AUCCGCCCGCuGCu -3'
miRNA:   3'- -GCGCCGGUAGaaccUAGGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 61951 0.69 0.598536
Target:  5'- gCGCGGCCcgCgcGGGccgacUCCGCcgCCGCGUc -3'
miRNA:   3'- -GCGCCGGuaGaaCCU-----AGGUG--GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 67444 0.77 0.233511
Target:  5'- gGCGGUCAUCUcGaGGUCCAgCgCGCGCg -3'
miRNA:   3'- gCGCCGGUAGAaC-CUAGGUgG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 15559 0.69 0.588509
Target:  5'- gCGCGGCCGUC--GGG-CCGCggCCGcCGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCCUaGGUG--GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 18444 0.7 0.578513
Target:  5'- cCGCGGCCAgccgUGcGGUgCCgcGCCCGCaGCg -3'
miRNA:   3'- -GCGCCGGUaga-AC-CUA-GG--UGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 78591 0.7 0.568555
Target:  5'- aCGCGGCCGcgCUcccUGGAgcugCCGCCgCG-GCa -3'
miRNA:   3'- -GCGCCGGUa-GA---ACCUa---GGUGG-GCgCG- -5'
6365 5' -58.6 NC_001847.1 + 102896 0.7 0.555674
Target:  5'- cCG-GGCCcgCUcugggcuccgccccUGGGUCCGgcgcCCCGCGCc -3'
miRNA:   3'- -GCgCCGGuaGA--------------ACCUAGGU----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 116137 0.7 0.548773
Target:  5'- gCGaagaGGCCGag--GGcgCCGCCCGUGCg -3'
miRNA:   3'- -GCg---CCGGUagaaCCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 106033 0.7 0.538962
Target:  5'- gCGCaGCCG-CUcGcGcgCCGCCCGCGCc -3'
miRNA:   3'- -GCGcCGGUaGAaC-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 35185 0.71 0.500373
Target:  5'- aCGCGGCCuUCgaGGAggaGCgCGCGCg -3'
miRNA:   3'- -GCGCCGGuAGaaCCUaggUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 94416 0.71 0.490914
Target:  5'- aCGgGGCCAugcccgucguggUCUgcgUGGGUUCGCCCaCGCa -3'
miRNA:   3'- -GCgCCGGU------------AGA---ACCUAGGUGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 132794 0.72 0.463054
Target:  5'- aCGCGGCCGggccggcgCggcgGGAgccgccgcugcCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGUa-------Gaa--CCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27619 0.72 0.444949
Target:  5'- gCGCGGCCAUCguuccucGUCCGCUCG-GCa -3'
miRNA:   3'- -GCGCCGGUAGaacc---UAGGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 36965 0.74 0.360837
Target:  5'- uGCGGCCAgCgcgGGcgCCggcgagcggGCCCGCGCc -3'
miRNA:   3'- gCGCCGGUaGaa-CCuaGG---------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121475 0.74 0.337856
Target:  5'- gCGCGGCUcg--UGGuUCCACaCCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaACCuAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 62120 0.76 0.256764
Target:  5'- cCGCGGCCG-CUgccgcggccUGGuUCCgcGCCCGCGCu -3'
miRNA:   3'- -GCGCCGGUaGA---------ACCuAGG--UGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.