miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 54231 0.72 0.436046
Target:  5'- gGCGGCCAcggccgCUUGGG-CgGCCaCGCGUg -3'
miRNA:   3'- gCGCCGGUa-----GAACCUaGgUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 134275 0.72 0.436046
Target:  5'- gGUGGUgaaCGUCaccGGGUCCAUCUGCGCg -3'
miRNA:   3'- gCGCCG---GUAGaa-CCUAGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27619 0.72 0.444949
Target:  5'- gCGCGGCCAUCguuccucGUCCGCUCG-GCa -3'
miRNA:   3'- -GCGCCGGUAGaacc---UAGGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 71242 0.72 0.444949
Target:  5'- gCGCGGCCAaugcaUUUGcGUCCGCCCacuccaGCGCg -3'
miRNA:   3'- -GCGCCGGUa----GAACcUAGGUGGG------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 50056 0.72 0.453952
Target:  5'- gGCGGCCGc---GGGUCCGCgCGCGg -3'
miRNA:   3'- gCGCCGGUagaaCCUAGGUGgGCGCg -5'
6365 5' -58.6 NC_001847.1 + 13939 0.72 0.463054
Target:  5'- cCGCGGCagg---GGggCCGcCCCGCGCa -3'
miRNA:   3'- -GCGCCGguagaaCCuaGGU-GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 127103 0.72 0.463054
Target:  5'- gCGCGGCU---UUGGGUCCACCgG-GCu -3'
miRNA:   3'- -GCGCCGGuagAACCUAGGUGGgCgCG- -5'
6365 5' -58.6 NC_001847.1 + 29981 0.72 0.463054
Target:  5'- aCGCGGCCGggccggcgCggcgGGAgccgccgcugcCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGUa-------Gaa--CCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 33217 0.72 0.463054
Target:  5'- gGUGGCUcggCUUGGcgCCGCgCCGgGCg -3'
miRNA:   3'- gCGCCGGua-GAACCuaGGUG-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 132794 0.72 0.463054
Target:  5'- aCGCGGCCGggccggcgCggcgGGAgccgccgcugcCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGUa-------Gaa--CCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 81281 0.72 0.472251
Target:  5'- cCGCGGCgGUC--GGcgCCGCCaGCGCc -3'
miRNA:   3'- -GCGCCGgUAGaaCCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 100624 0.72 0.472251
Target:  5'- gGCGGCgCAUCgccGGcgCCGUCCGCGUc -3'
miRNA:   3'- gCGCCG-GUAGaa-CCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 10794 0.71 0.481539
Target:  5'- aCGCgGGCCuguUUUUGGGcuaCugCCGCGCg -3'
miRNA:   3'- -GCG-CCGGu--AGAACCUag-GugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 124265 0.71 0.481539
Target:  5'- cCGCaGGCgGUCUgccUGGG--CGCCCGCGCc -3'
miRNA:   3'- -GCG-CCGgUAGA---ACCUagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 123333 0.71 0.481539
Target:  5'- gCGCGcuguGCCGUCUgacGGAaagCACCCGCGUg -3'
miRNA:   3'- -GCGC----CGGUAGAa--CCUag-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 44760 0.71 0.481539
Target:  5'- cCG-GGCCuUCcUGGccUCCAUCCGCGCg -3'
miRNA:   3'- -GCgCCGGuAGaACCu-AGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 122316 0.71 0.481539
Target:  5'- -cCGGCCAUCUcccaaGcGcgCCGCUCGCGCg -3'
miRNA:   3'- gcGCCGGUAGAa----C-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 116165 0.71 0.481539
Target:  5'- gGCGGCCGcg--GGcgCCGCggCCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCuaGGUG--GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 49888 0.71 0.490914
Target:  5'- cCGCGGCCAcCUacucgcgcaccUGGcgCCGCCgGcCGCc -3'
miRNA:   3'- -GCGCCGGUaGA-----------ACCuaGGUGGgC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 102380 0.71 0.490914
Target:  5'- gGcCGGCCGUCgcgaaGcgCCGCCCGCGa -3'
miRNA:   3'- gC-GCCGGUAGaac--CuaGGUGGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.