miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 86603 0.66 0.811313
Target:  5'- uGCgGGCCAUUgcugcUGG--CCGCgCCGCGUa -3'
miRNA:   3'- gCG-CCGGUAGa----ACCuaGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32491 0.66 0.811313
Target:  5'- uCGCGGCCGcUCccGGcgcgUCACCCcgagacGCGCg -3'
miRNA:   3'- -GCGCCGGU-AGaaCCua--GGUGGG------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 65673 0.66 0.811313
Target:  5'- -cCGGCCAgca-GGAgccccgccgCCGCCgCGCGCg -3'
miRNA:   3'- gcGCCGGUagaaCCUa--------GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 69694 0.66 0.811313
Target:  5'- gCGgGGCCGgcgCUcGG-UCCGCggCGCGCg -3'
miRNA:   3'- -GCgCCGGUa--GAaCCuAGGUGg-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 99889 0.66 0.811313
Target:  5'- gCGCGGCUgAUC-----UCCGCCgCGCGCc -3'
miRNA:   3'- -GCGCCGG-UAGaaccuAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 114597 0.66 0.799974
Target:  5'- aCGUGGCCGUCcccgccgagaagUucacguccuuccagUGGGcccCCGCCCGCGa -3'
miRNA:   3'- -GCGCCGGUAG------------A--------------ACCUa--GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 102848 0.66 0.793763
Target:  5'- cCGCGGCggCGUCgcGGggCCGCgCCaCGCg -3'
miRNA:   3'- -GCGCCG--GUAGaaCCuaGGUG-GGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 118413 0.66 0.784772
Target:  5'- uCGUGGCCGUCgccUGcGGUCUcgGCgCCGUGg -3'
miRNA:   3'- -GCGCCGGUAGa--AC-CUAGG--UG-GGCGCg -5'
6365 5' -58.6 NC_001847.1 + 129763 0.66 0.788385
Target:  5'- cCGcCGGCCG-CUcggaccgccggagccUGGGcccggCCGCgCCGCGCg -3'
miRNA:   3'- -GC-GCCGGUaGA---------------ACCUa----GGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 108704 0.66 0.79108
Target:  5'- gCGCGGCCuaccgcugccccGUCUcgcggcugggcgacUGcGAcgcgacggcguUCCugCCGCGCu -3'
miRNA:   3'- -GCGCCGG------------UAGA--------------AC-CU-----------AGGugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 98591 0.66 0.791976
Target:  5'- gCGCGGCgccagcgcgucaAUCUccGaAUCCGCCuCGCGCa -3'
miRNA:   3'- -GCGCCGg-----------UAGAacC-UAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 57020 0.66 0.793763
Target:  5'- gCGCGcGCCcgCUuuUGG---CGCCCGCGUc -3'
miRNA:   3'- -GCGC-CGGuaGA--ACCuagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 72643 0.66 0.793763
Target:  5'- gGCGGCUg---UGGccgCCACCC-CGCg -3'
miRNA:   3'- gCGCCGGuagaACCua-GGUGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 38229 0.66 0.793763
Target:  5'- cCGCGcGCC-UCUacgcGGccgCCAguCCCGCGCg -3'
miRNA:   3'- -GCGC-CGGuAGAa---CCua-GGU--GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 51761 0.66 0.793763
Target:  5'- aCGCGGUCugggugGGAUgCGgcgccagcucgcCCCGCGCg -3'
miRNA:   3'- -GCGCCGGuagaa-CCUAgGU------------GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 80582 0.66 0.793763
Target:  5'- gCGgGGCCGUCguccuccGcgCCGCCCcCGCc -3'
miRNA:   3'- -GCgCCGGUAGaac----CuaGGUGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 103367 0.66 0.793763
Target:  5'- gGCaGGCCGUgUUGGc-CgGCgCGCGCg -3'
miRNA:   3'- gCG-CCGGUAgAACCuaGgUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 103984 0.66 0.793763
Target:  5'- gCGCGG-CGUCgacg--CCGCCCGCGa -3'
miRNA:   3'- -GCGCCgGUAGaaccuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 108654 0.66 0.793763
Target:  5'- aGUGGCCGgggCcgcGGAcgaguuUCCGcucCCCGCGCu -3'
miRNA:   3'- gCGCCGGUa--Gaa-CCU------AGGU---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36951 0.66 0.793763
Target:  5'- cCGCGGCCGUCgcacggCUGCCUagaggacuggGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaccuaGGUGGG----------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.