miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 38229 0.66 0.793763
Target:  5'- cCGCGcGCC-UCUacgcGGccgCCAguCCCGCGCg -3'
miRNA:   3'- -GCGC-CGGuAGAa---CCua-GGU--GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 72643 0.66 0.793763
Target:  5'- gGCGGCUg---UGGccgCCACCC-CGCg -3'
miRNA:   3'- gCGCCGGuagaACCua-GGUGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 57020 0.66 0.793763
Target:  5'- gCGCGcGCCcgCUuuUGG---CGCCCGCGUc -3'
miRNA:   3'- -GCGC-CGGuaGA--ACCuagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 108654 0.66 0.793763
Target:  5'- aGUGGCCGgggCcgcGGAcgaguuUCCGcucCCCGCGCu -3'
miRNA:   3'- gCGCCGGUa--Gaa-CCU------AGGU---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102848 0.66 0.793763
Target:  5'- cCGCGGCggCGUCgcGGggCCGCgCCaCGCg -3'
miRNA:   3'- -GCGCCG--GUAGaaCCuaGGUG-GGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 36951 0.66 0.793763
Target:  5'- cCGCGGCCGUCgcacggCUGCCUagaggacuggGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaccuaGGUGGG----------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 84089 0.66 0.79287
Target:  5'- gGCGGCCGUCaaGGAgUCAUgggacaggcggcgUCGUGCa -3'
miRNA:   3'- gCGCCGGUAGaaCCUaGGUG-------------GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 9563 0.66 0.791976
Target:  5'- uGCaGCCGUCcagcccgCCGCCCGCGg -3'
miRNA:   3'- gCGcCGGUAGaaccua-GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 98591 0.66 0.791976
Target:  5'- gCGCGGCgccagcgcgucaAUCUccGaAUCCGCCuCGCGCa -3'
miRNA:   3'- -GCGCCGg-----------UAGAacC-UAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 108704 0.66 0.79108
Target:  5'- gCGCGGCCuaccgcugccccGUCUcgcggcugggcgacUGcGAcgcgacggcguUCCugCCGCGCu -3'
miRNA:   3'- -GCGCCGG------------UAGA--------------AC-CU-----------AGGugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 129763 0.66 0.788385
Target:  5'- cCGcCGGCCG-CUcggaccgccggagccUGGGcccggCCGCgCCGCGCg -3'
miRNA:   3'- -GC-GCCGGUaGA---------------ACCUa----GGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 96870 0.66 0.784772
Target:  5'- gGCGGCgGUCcgcgcuggGGAgggaCCGCCgugcuCGCGCg -3'
miRNA:   3'- gCGCCGgUAGaa------CCUa---GGUGG-----GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 50090 0.66 0.784772
Target:  5'- gCGCGGCCAa---GGcugCCGCgCCGgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUG-GGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 87409 0.66 0.784772
Target:  5'- gCGCGGgCGg---GGccCCGCCCGcCGCg -3'
miRNA:   3'- -GCGCCgGUagaaCCuaGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 121806 0.66 0.784772
Target:  5'- uCGCGGgCGcCUgcucgCCGCCCGUGCc -3'
miRNA:   3'- -GCGCCgGUaGAaccuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14185 0.66 0.784772
Target:  5'- aCGCGGCg--C-UGGGUCCGCCCa--- -3'
miRNA:   3'- -GCGCCGguaGaACCUAGGUGGGcgcg -5'
6365 5' -58.6 NC_001847.1 + 6967 0.66 0.784772
Target:  5'- uCGCGGCgGcgCU----UCCGCCCGCGg -3'
miRNA:   3'- -GCGCCGgUa-GAaccuAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 46209 0.66 0.784772
Target:  5'- gGCGGCCGcCgccGGG-CCGgCCGCGg -3'
miRNA:   3'- gCGCCGGUaGaa-CCUaGGUgGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 33568 0.66 0.784772
Target:  5'- aCGCGGggggCGUC-UGGcgCgGCCCGgGCu -3'
miRNA:   3'- -GCGCCg---GUAGaACCuaGgUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 66045 0.66 0.784772
Target:  5'- aCGCGGCCcgCcc--GUCCGCgCGCGg -3'
miRNA:   3'- -GCGCCGGuaGaaccUAGGUGgGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.