miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 106287 0.66 0.802613
Target:  5'- gCGCGGCCA---UGGcGUCCccgACCgGCGg -3'
miRNA:   3'- -GCGCCGGUagaACC-UAGG---UGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 21357 0.66 0.802613
Target:  5'- uGCGcGCCGUCggcggcucGGG-CCGCCuCGgGCg -3'
miRNA:   3'- gCGC-CGGUAGaa------CCUaGGUGG-GCgCG- -5'
6365 5' -58.6 NC_001847.1 + 88216 0.66 0.802613
Target:  5'- aCGCGGCCc----GGAgCCcggGCCCGaCGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCUaGG---UGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 126449 0.66 0.802613
Target:  5'- cCGUGGCCGUCggcaucGUCgACUCGgGCu -3'
miRNA:   3'- -GCGCCGGUAGaacc--UAGgUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 51281 0.66 0.802613
Target:  5'- cCGCGGCgCGcUCggGGAagUgGCCCGCGa -3'
miRNA:   3'- -GCGCCG-GU-AGaaCCUa-GgUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 30075 0.66 0.802613
Target:  5'- cCGCGuGCCGccCggGGAcuaccacaCGCCCGCGCc -3'
miRNA:   3'- -GCGC-CGGUa-GaaCCUag------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27988 0.66 0.802613
Target:  5'- cCGCGGCCGgggcGGAggCGgCCGCGg -3'
miRNA:   3'- -GCGCCGGUagaaCCUagGUgGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 3474 0.66 0.802613
Target:  5'- gCGCGGCCA---UGGcGUCCccgACCgGCGg -3'
miRNA:   3'- -GCGCCGGUagaACC-UAGG---UGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 83650 0.66 0.802613
Target:  5'- gCGCGGCgcugCUccgaguuugacUGGcgCCACCUgGCGCu -3'
miRNA:   3'- -GCGCCGgua-GA-----------ACCuaGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 132888 0.66 0.802613
Target:  5'- cCGCGuGCCGccCggGGAcuaccacaCGCCCGCGCc -3'
miRNA:   3'- -GCGC-CGGUa-GaaCCUag------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 114597 0.66 0.799974
Target:  5'- aCGUGGCCGUCcccgccgagaagUucacguccuuccagUGGGcccCCGCCCGCGa -3'
miRNA:   3'- -GCGCCGGUAG------------A--------------ACCUa--GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 55741 0.66 0.793763
Target:  5'- -aCGGUgGUCc-GGcUCgCGCCCGCGCg -3'
miRNA:   3'- gcGCCGgUAGaaCCuAG-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 81242 0.66 0.793763
Target:  5'- gGCgGGCCAggcUGGG-CCugCCGCuGCu -3'
miRNA:   3'- gCG-CCGGUagaACCUaGGugGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 57020 0.66 0.793763
Target:  5'- gCGCGcGCCcgCUuuUGG---CGCCCGCGUc -3'
miRNA:   3'- -GCGC-CGGuaGA--ACCuagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 119580 0.66 0.793763
Target:  5'- uGCcGCCGaUggGGGUUCcCCCGCGCc -3'
miRNA:   3'- gCGcCGGUaGaaCCUAGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 102848 0.66 0.793763
Target:  5'- cCGCGGCggCGUCgcGGggCCGCgCCaCGCg -3'
miRNA:   3'- -GCGCCG--GUAGaaCCuaGGUG-GGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 80582 0.66 0.793763
Target:  5'- gCGgGGCCGUCguccuccGcgCCGCCCcCGCc -3'
miRNA:   3'- -GCgCCGGUAGaac----CuaGGUGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 38229 0.66 0.793763
Target:  5'- cCGCGcGCC-UCUacgcGGccgCCAguCCCGCGCg -3'
miRNA:   3'- -GCGC-CGGuAGAa---CCua-GGU--GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 51761 0.66 0.793763
Target:  5'- aCGCGGUCugggugGGAUgCGgcgccagcucgcCCCGCGCg -3'
miRNA:   3'- -GCGCCGGuagaa-CCUAgGU------------GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 103367 0.66 0.793763
Target:  5'- gGCaGGCCGUgUUGGc-CgGCgCGCGCg -3'
miRNA:   3'- gCG-CCGGUAgAACCuaGgUGgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.