miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 132794 0.72 0.463054
Target:  5'- aCGCGGCCGggccggcgCggcgGGAgccgccgcugcCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGUa-------Gaa--CCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27619 0.72 0.444949
Target:  5'- gCGCGGCCAUCguuccucGUCCGCUCG-GCa -3'
miRNA:   3'- -GCGCCGGUAGaacc---UAGGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 37599 0.75 0.301965
Target:  5'- gGCGGCCGg---GGGcCgGCCCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCUaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 51419 0.77 0.233511
Target:  5'- gGCGGCgCAgac-GGAgCCGCCCGCGCg -3'
miRNA:   3'- gCGCCG-GUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 4279 0.7 0.538962
Target:  5'- gGCGGCCA-CgaGGcgCgCGCCgGCGCc -3'
miRNA:   3'- gCGCCGGUaGaaCCuaG-GUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 47708 0.71 0.500373
Target:  5'- gGCGGCCG-CcgGGAacgccagcccgUCGCCCGCGCa -3'
miRNA:   3'- gCGCCGGUaGaaCCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36458 0.73 0.409969
Target:  5'- gCGCGGCUGUgUgagcgGGAccUgCACCUGCGCg -3'
miRNA:   3'- -GCGCCGGUAgAa----CCU--AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14064 0.78 0.197095
Target:  5'- uCGCGGCCGgugCUUGGG-CCGCUCGUGg -3'
miRNA:   3'- -GCGCCGGUa--GAACCUaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 94416 0.71 0.490914
Target:  5'- aCGgGGCCAugcccgucguggUCUgcgUGGGUUCGCCCaCGCa -3'
miRNA:   3'- -GCgCCGGU------------AGA---ACCUAGGUGGGcGCG- -5'
6365 5' -58.6 NC_001847.1 + 28351 0.79 0.187641
Target:  5'- gCGCGGCCGUC----AUCCGCCCGCuGCu -3'
miRNA:   3'- -GCGCCGGUAGaaccUAGGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 132217 0.72 0.433395
Target:  5'- gGCGGCCGcgCUggcggcgcggaccgUGGccCCGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUa-GA--------------ACCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 10794 0.71 0.481539
Target:  5'- aCGCgGGCCuguUUUUGGGcuaCugCCGCGCg -3'
miRNA:   3'- -GCG-CCGGu--AGAACCUag-GugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36965 0.74 0.360837
Target:  5'- uGCGGCCAgCgcgGGcgCCggcgagcggGCCCGCGCc -3'
miRNA:   3'- gCGCCGGUaGaa-CCuaGG---------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121475 0.74 0.337856
Target:  5'- gCGCGGCUcg--UGGuUCCACaCCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaACCuAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 62120 0.76 0.256764
Target:  5'- cCGCGGCCG-CUgccgcggccUGGuUCCgcGCCCGCGCu -3'
miRNA:   3'- -GCGCCGGUaGA---------ACCuAGG--UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 67444 0.77 0.233511
Target:  5'- gGCGGUCAUCUcGaGGUCCAgCgCGCGCg -3'
miRNA:   3'- gCGCCGGUAGAaC-CUAGGUgG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 116137 0.7 0.548773
Target:  5'- gCGaagaGGCCGag--GGcgCCGCCCGUGCg -3'
miRNA:   3'- -GCg---CCGGUagaaCCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 106033 0.7 0.538962
Target:  5'- gCGCaGCCG-CUcGcGcgCCGCCCGCGCc -3'
miRNA:   3'- -GCGcCGGUaGAaC-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 82716 0.71 0.510871
Target:  5'- aGCgGGCCcgCUUcGAgcucgacagcgcgcgCCGCCCGCGCu -3'
miRNA:   3'- gCG-CCGGuaGAAcCUa--------------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 117276 0.71 0.500373
Target:  5'- gGCcGCCGUUUUGGggCgC-CCCGCGCc -3'
miRNA:   3'- gCGcCGGUAGAACCuaG-GuGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.