miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 92390 0.79 0.171626
Target:  5'- --aGGCCGUCcUGGAUcugcuguccgccccgCCGCCCGCGCg -3'
miRNA:   3'- gcgCCGGUAGaACCUA---------------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36458 0.73 0.409969
Target:  5'- gCGCGGCUGUgUgagcgGGAccUgCACCUGCGCg -3'
miRNA:   3'- -GCGCCGGUAgAa----CCU--AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27619 0.72 0.444949
Target:  5'- gCGCGGCCAUCguuccucGUCCGCUCG-GCa -3'
miRNA:   3'- -GCGCCGGUAGaacc---UAGGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 70283 0.66 0.811313
Target:  5'- aCGCGcGCCuggcgGGGUCgcggCGCgCCGCGCu -3'
miRNA:   3'- -GCGC-CGGuagaaCCUAG----GUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 67444 0.77 0.233511
Target:  5'- gGCGGUCAUCUcGaGGUCCAgCgCGCGCg -3'
miRNA:   3'- gCGCCGGUAGAaC-CUAGGUgG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 83296 0.76 0.250778
Target:  5'- uGCGGCC-UCcu-GAUCgACCCGCGCa -3'
miRNA:   3'- gCGCCGGuAGaacCUAGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 62120 0.76 0.256764
Target:  5'- cCGCGGCCG-CUgccgcggccUGGuUCCgcGCCCGCGCu -3'
miRNA:   3'- -GCGCCGGUaGA---------ACCuAGG--UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121884 0.75 0.288454
Target:  5'- aCGCGGCCugccUGcGAaCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGuagaAC-CUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121475 0.74 0.337856
Target:  5'- gCGCGGCUcg--UGGuUCCACaCCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaACCuAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 91336 0.73 0.401495
Target:  5'- gCGCGGCCGUCgaGcGUCaguaguagcgCGCCCGUGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCcUAG----------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 82508 0.74 0.353057
Target:  5'- gGCGGCCAUCggcaacgUGG--CgAUCCGCGCg -3'
miRNA:   3'- gCGCCGGUAGa------ACCuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 37599 0.75 0.301965
Target:  5'- gGCGGCCGg---GGGcCgGCCCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCUaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 28351 0.79 0.187641
Target:  5'- gCGCGGCCGUC----AUCCGCCCGCuGCu -3'
miRNA:   3'- -GCGCCGGUAGaaccUAGGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 36965 0.74 0.360837
Target:  5'- uGCGGCCAgCgcgGGcgCCggcgagcggGCCCGCGCc -3'
miRNA:   3'- gCGCCGGUaGaa-CCuaGG---------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 14064 0.78 0.197095
Target:  5'- uCGCGGCCGgugCUUGGG-CCGCUCGUGg -3'
miRNA:   3'- -GCGCCGGUa--GAACCUaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 57085 0.75 0.301965
Target:  5'- gGCGGCCAgcgCUgcgcUGGAccgccgcgCCGCCgCGCGCa -3'
miRNA:   3'- gCGCCGGUa--GA----ACCUa-------GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 104496 0.73 0.376751
Target:  5'- gCGCGGCCAguUCUcgGGGUCCA-CgGCGUc -3'
miRNA:   3'- -GCGCCGGU--AGAa-CCUAGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 132217 0.72 0.433395
Target:  5'- gGCGGCCGcgCUggcggcgcggaccgUGGccCCGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUa-GA--------------ACCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 51419 0.77 0.233511
Target:  5'- gGCGGCgCAgac-GGAgCCGCCCGCGCg -3'
miRNA:   3'- gCGCCG-GUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 104749 0.76 0.250778
Target:  5'- gGCGGCCA-CUcGGG-CCGCCgGCGCu -3'
miRNA:   3'- gCGCCGGUaGAaCCUaGGUGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.