miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 64499 0.75 0.323137
Target:  5'- gCGCGGCCA-Cguc-AUCCAgCCCGCGCa -3'
miRNA:   3'- -GCGCCGGUaGaaccUAGGU-GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 86306 0.75 0.323137
Target:  5'- gCGCGGCCGa---GGcgCC-CCCGCGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 70804 0.74 0.337856
Target:  5'- gCGgGGCCGggaggGGAUCCGCCgaGCGCc -3'
miRNA:   3'- -GCgCCGGUagaa-CCUAGGUGGg-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 121475 0.74 0.337856
Target:  5'- gCGCGGCUcg--UGGuUCCACaCCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaACCuAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 144 0.74 0.348446
Target:  5'- gCGCGGCCAUCUUGcuUCCAaacucauuagcauacCCCGCcCa -3'
miRNA:   3'- -GCGCCGGUAGAACcuAGGU---------------GGGCGcG- -5'
6365 5' -58.6 NC_001847.1 + 82508 0.74 0.353057
Target:  5'- gGCGGCCAUCggcaacgUGG--CgAUCCGCGCg -3'
miRNA:   3'- gCGCCGGUAGa------ACCuaGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 81014 0.74 0.360837
Target:  5'- cCGCGGCCA-CUUGcagccggugcuGcgCCuCCCGCGCg -3'
miRNA:   3'- -GCGCCGGUaGAAC-----------CuaGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36965 0.74 0.360837
Target:  5'- uGCGGCCAgCgcgGGcgCCggcgagcggGCCCGCGCc -3'
miRNA:   3'- gCGCCGGUaGaa-CCuaGG---------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 127283 0.74 0.360837
Target:  5'- gGCGGCCGccUCUgcaGGcgCCACCgGCGg -3'
miRNA:   3'- gCGCCGGU--AGAa--CCuaGGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 120985 0.74 0.361621
Target:  5'- gCGCGGCCGUCgcccuagcggCCGCCCagGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaccua----GGUGGG--CGCG- -5'
6365 5' -58.6 NC_001847.1 + 75998 0.74 0.36794
Target:  5'- aGCGGCgccgguaCAaCUgGGA-CCACCCGCGCg -3'
miRNA:   3'- gCGCCG-------GUaGAaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 1683 0.73 0.376751
Target:  5'- gCGCGGCCAguUCUcgGGGUCCA-CgGCGUc -3'
miRNA:   3'- -GCGCCGGU--AGAa-CCUAGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 104496 0.73 0.376751
Target:  5'- gCGCGGCCAguUCUcgGGGUCCA-CgGCGUc -3'
miRNA:   3'- -GCGCCGGU--AGAa-CCUAGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 113604 0.73 0.384884
Target:  5'- aCGCGauguGCCAgCUUGGGcgcgUUgGCCCGCGCg -3'
miRNA:   3'- -GCGC----CGGUaGAACCU----AGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 41627 0.73 0.393964
Target:  5'- cCGgGGCCGcCgggcgagugggugcGGAUCCACCCGaCGCg -3'
miRNA:   3'- -GCgCCGGUaGaa------------CCUAGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 97578 0.73 0.401495
Target:  5'- aGCGGCCAgcgccgccgcgUCUUccgaaGGG-CCGCCCGuCGCg -3'
miRNA:   3'- gCGCCGGU-----------AGAA-----CCUaGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 91336 0.73 0.401495
Target:  5'- gCGCGGCCGUCgaGcGUCaguaguagcgCGCCCGUGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCcUAG----------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 36458 0.73 0.409969
Target:  5'- gCGCGGCUGUgUgagcgGGAccUgCACCUGCGCg -3'
miRNA:   3'- -GCGCCGGUAgAa----CCU--AgGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 132217 0.72 0.433395
Target:  5'- gGCGGCCGcgCUggcggcgcggaccgUGGccCCGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUa-GA--------------ACCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 29404 0.72 0.433395
Target:  5'- gGCGGCCGcgCUggcggcgcggaccgUGGccCCGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUa-GA--------------ACCuaGGUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.