miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 3573 0.67 0.737993
Target:  5'- gGCGcGCCAgCUgcaGGUCCggGCCCGCGa -3'
miRNA:   3'- gCGC-CGGUaGAac-CUAGG--UGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 3770 0.69 0.628732
Target:  5'- --aGGCCcUCgcGGGUgUCGCCCGCGCc -3'
miRNA:   3'- gcgCCGGuAGaaCCUA-GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 3997 0.69 0.588509
Target:  5'- gCGCGGCCccgCggGGcgCCggGCCCgGCGCc -3'
miRNA:   3'- -GCGCCGGua-GaaCCuaGG--UGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 3998 0.66 0.770113
Target:  5'- gCGCGGCCAagUUaacaGUCCGCCCcccgagcagcauaccGCGCc -3'
miRNA:   3'- -GCGCCGGUagAAcc--UAGGUGGG---------------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 4170 0.67 0.718594
Target:  5'- aGCgGGCCuuGUUUUGGG-CCGCgcgcccgugggCCGCGCg -3'
miRNA:   3'- gCG-CCGG--UAGAACCUaGGUG-----------GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 4279 0.7 0.538962
Target:  5'- gGCGGCCA-CgaGGcgCgCGCCgGCGCc -3'
miRNA:   3'- gCGCCGGUaGaaCCuaG-GUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 4914 0.7 0.548773
Target:  5'- aCGCGGUCGUUagGGccgCCGcgcuuCCCGCGCc -3'
miRNA:   3'- -GCGCCGGUAGaaCCua-GGU-----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 5467 0.67 0.747563
Target:  5'- gGCGGCCgcGUCUcuc-UCCuuucCCCGCGCc -3'
miRNA:   3'- gCGCCGG--UAGAaccuAGGu---GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 5935 0.67 0.728334
Target:  5'- gGCGGCgGaCgacGGGcCCGCCCGCuGCu -3'
miRNA:   3'- gCGCCGgUaGaa-CCUaGGUGGGCG-CG- -5'
6365 5' -58.6 NC_001847.1 + 6300 0.67 0.757035
Target:  5'- gCGCGGCauuuaGUUUUGGugguuggCCcuuuuugugcgcGCCUGCGCg -3'
miRNA:   3'- -GCGCCGg----UAGAACCua-----GG------------UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 6967 0.66 0.784772
Target:  5'- uCGCGGCgGcgCU----UCCGCCCGCGg -3'
miRNA:   3'- -GCGCCGgUa-GAaccuAGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 7016 0.66 0.766399
Target:  5'- aGCGGCCG-Cgc--AUCCGCCaGCGCc -3'
miRNA:   3'- gCGCCGGUaGaaccUAGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 8378 0.68 0.698907
Target:  5'- gCGCGGCag-CgugGGcgUCugCCGCGUa -3'
miRNA:   3'- -GCGCCGguaGaa-CCuaGGugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 9563 0.66 0.791976
Target:  5'- uGCaGCCGUCcagcccgCCGCCCGCGg -3'
miRNA:   3'- gCGcCGGUAGaaccua-GGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 10394 0.68 0.688978
Target:  5'- gCGgGGCCG-CUUuaugacGGcccGUCC-CCCGCGCg -3'
miRNA:   3'- -GCgCCGGUaGAA------CC---UAGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 10794 0.71 0.481539
Target:  5'- aCGCgGGCCuguUUUUGGGcuaCugCCGCGCg -3'
miRNA:   3'- -GCG-CCGGu--AGAACCUag-GugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 11688 0.71 0.509912
Target:  5'- gGCGGCCGUCgccGGG-CCaaGCCCG-GCa -3'
miRNA:   3'- gCGCCGGUAGaa-CCUaGG--UGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 11898 0.7 0.558639
Target:  5'- uGCGGCCg----GGGUCCGCgCUgGCGCg -3'
miRNA:   3'- gCGCCGGuagaaCCUAGGUG-GG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 12330 0.68 0.679003
Target:  5'- uGCGcGCCAUCga-GGUCCuGCCCGagucaGCg -3'
miRNA:   3'- gCGC-CGGUAGaacCUAGG-UGGGCg----CG- -5'
6365 5' -58.6 NC_001847.1 + 12600 0.66 0.811313
Target:  5'- aGCGGCUGUCggaaGGG-CC-CCCGCu- -3'
miRNA:   3'- gCGCCGGUAGaa--CCUaGGuGGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.