miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 129455 0.68 0.658949
Target:  5'- aGCGGCUA-CUugagcUGGcggccgCCGCCgCGCGCg -3'
miRNA:   3'- gCGCCGGUaGA-----ACCua----GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 129306 0.68 0.698907
Target:  5'- gGCGGCUcgCUUcGGGUgggugcugcaCgCACCCgGCGCg -3'
miRNA:   3'- gCGCCGGuaGAA-CCUA----------G-GUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 128141 0.67 0.72542
Target:  5'- gCGCGGCCGcucgucgcguuuuaUCUgcUGGG-CgGCCCGCcggGCg -3'
miRNA:   3'- -GCGCCGGU--------------AGA--ACCUaGgUGGGCG---CG- -5'
6365 5' -58.6 NC_001847.1 + 127948 0.69 0.63982
Target:  5'- gGCGGCCGcggCUgccuaaagccgaagcGGAUgaaCCGCCCGgGCg -3'
miRNA:   3'- gCGCCGGUa--GAa--------------CCUA---GGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 127283 0.74 0.360837
Target:  5'- gGCGGCCGccUCUgcaGGcgCCACCgGCGg -3'
miRNA:   3'- gCGCCGGU--AGAa--CCuaGGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 127103 0.72 0.463054
Target:  5'- gCGCGGCU---UUGGGUCCACCgG-GCu -3'
miRNA:   3'- -GCGCCGGuagAACCUAGGUGGgCgCG- -5'
6365 5' -58.6 NC_001847.1 + 126712 0.69 0.628732
Target:  5'- -aCGGCCGUCUUGG---CACCCGgGg -3'
miRNA:   3'- gcGCCGGUAGAACCuagGUGGGCgCg -5'
6365 5' -58.6 NC_001847.1 + 126449 0.66 0.802613
Target:  5'- cCGUGGCCGUCggcaucGUCgACUCGgGCu -3'
miRNA:   3'- -GCGCCGGUAGaacc--UAGgUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 125629 0.69 0.618654
Target:  5'- aGCGcGCCGcccgcucggCUcGGGUCCGCUCGuCGCg -3'
miRNA:   3'- gCGC-CGGUa--------GAaCCUAGGUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 125073 0.67 0.757035
Target:  5'- gCGCGGCgg----GGcgCUggGCCCGCGCg -3'
miRNA:   3'- -GCGCCGguagaaCCuaGG--UGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 124653 0.67 0.737993
Target:  5'- gCGgGGCCGUCggGGAagcccagcUCgGCCUGCa- -3'
miRNA:   3'- -GCgCCGGUAGaaCCU--------AGgUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 124556 0.69 0.618654
Target:  5'- gCGcCGGCCcgCgcgcgcgggGGggCCGCCgGCGCc -3'
miRNA:   3'- -GC-GCCGGuaGaa-------CCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 124265 0.71 0.481539
Target:  5'- cCGCaGGCgGUCUgccUGGG--CGCCCGCGCc -3'
miRNA:   3'- -GCG-CCGgUAGA---ACCUagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 123333 0.71 0.481539
Target:  5'- gCGCGcuguGCCGUCUgacGGAaagCACCCGCGUg -3'
miRNA:   3'- -GCGC----CGGUAGAa--CCUag-GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 123083 0.69 0.598536
Target:  5'- cCGCGGCC-UC--GGcGUCCGCagCGCGCa -3'
miRNA:   3'- -GCGCCGGuAGaaCC-UAGGUGg-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 122670 0.66 0.766399
Target:  5'- cCGCcGCCA-CgcgGGAagccgcggaggcUCCGCCgCGCGCg -3'
miRNA:   3'- -GCGcCGGUaGaa-CCU------------AGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 122316 0.71 0.481539
Target:  5'- -cCGGCCAUCUcccaaGcGcgCCGCUCGCGCg -3'
miRNA:   3'- gcGCCGGUAGAa----C-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 122012 0.77 0.233511
Target:  5'- cCGCGGCaggCggcgcGGcgCCGCCCGCGCg -3'
miRNA:   3'- -GCGCCGguaGaa---CCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121884 0.75 0.288454
Target:  5'- aCGCGGCCugccUGcGAaCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGuagaAC-CUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121806 0.66 0.784772
Target:  5'- uCGCGGgCGcCUgcucgCCGCCCGUGCc -3'
miRNA:   3'- -GCGCCgGUaGAaccuaGGUGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.