miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 134275 0.72 0.436046
Target:  5'- gGUGGUgaaCGUCaccGGGUCCAUCUGCGCg -3'
miRNA:   3'- gCGCCG---GUAGaa-CCUAGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 134263 0.67 0.708782
Target:  5'- gGCGGCCccggCgcgGGccgCCGCCgCGCGUg -3'
miRNA:   3'- gCGCCGGua--Gaa-CCua-GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 134139 0.67 0.728334
Target:  5'- gGCGGCCugg-UGGAgcgcgugccgCCGCCgGCGg -3'
miRNA:   3'- gCGCCGGuagaACCUa---------GGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 134038 0.67 0.747563
Target:  5'- --aGGCCG-CggcGGcgCCGCCCGCGg -3'
miRNA:   3'- gcgCCGGUaGaa-CCuaGGUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 133987 0.66 0.775648
Target:  5'- gCGCGGCCGcgCUgccGGAgCCGCgCGCcgagGCg -3'
miRNA:   3'- -GCGCCGGUa-GAa--CCUaGGUGgGCG----CG- -5'
6365 5' -58.6 NC_001847.1 + 133597 0.68 0.658949
Target:  5'- uCGCGGCgCGUCU----UCgGCCCGgGCg -3'
miRNA:   3'- -GCGCCG-GUAGAaccuAGgUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 133214 0.67 0.718594
Target:  5'- gGCGGCCcgagUGGccgCCGCgCCGCGg -3'
miRNA:   3'- gCGCCGGuagaACCua-GGUG-GGCGCg -5'
6365 5' -58.6 NC_001847.1 + 132967 0.7 0.578513
Target:  5'- gCGCGGCUcgC--GGA-CCACCCGCu- -3'
miRNA:   3'- -GCGCCGGuaGaaCCUaGGUGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 132888 0.66 0.802613
Target:  5'- cCGCGuGCCGccCggGGAcuaccacaCGCCCGCGCc -3'
miRNA:   3'- -GCGC-CGGUa-GaaCCUag------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 132794 0.72 0.463054
Target:  5'- aCGCGGCCGggccggcgCggcgGGAgccgccgcugcCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGUa-------Gaa--CCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 132572 0.67 0.728334
Target:  5'- gGCGGCCG-CgcaGG---CGCCCGCGCc -3'
miRNA:   3'- gCGCCGGUaGaa-CCuagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 132349 0.69 0.588509
Target:  5'- gGCGGCCGcgCUcgcggcccUGGAggCCGCCgGCGg -3'
miRNA:   3'- gCGCCGGUa-GA--------ACCUa-GGUGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 132217 0.72 0.433395
Target:  5'- gGCGGCCGcgCUggcggcgcggaccgUGGccCCGCUCGCGCg -3'
miRNA:   3'- gCGCCGGUa-GA--------------ACCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 132132 0.66 0.775648
Target:  5'- gCGCGGCCcgCgacgcggUGGA---GCgCGCGCg -3'
miRNA:   3'- -GCGCCGGuaGa------ACCUaggUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 132049 0.68 0.688978
Target:  5'- cCGCGGCCugcc-GGccgCgGCCUGCGCg -3'
miRNA:   3'- -GCGCCGGuagaaCCua-GgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 131992 0.69 0.638812
Target:  5'- gGCGGCCcgCc--GcgCCGCCgGCGCc -3'
miRNA:   3'- gCGCCGGuaGaacCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 130801 0.66 0.802613
Target:  5'- cCGCGGCCGgggcGGAggCGgCCGCGg -3'
miRNA:   3'- -GCGCCGGUagaaCCUagGUgGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 130515 0.69 0.608587
Target:  5'- gCGCGagcGCCGgc--GGG-CCGCCCGCGCc -3'
miRNA:   3'- -GCGC---CGGUagaaCCUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 130072 0.67 0.728334
Target:  5'- aCGCGucGCCGUCcUGGGcCgCGCCCGacCGCg -3'
miRNA:   3'- -GCGC--CGGUAGaACCUaG-GUGGGC--GCG- -5'
6365 5' -58.6 NC_001847.1 + 129763 0.66 0.788385
Target:  5'- cCGcCGGCCG-CUcggaccgccggagccUGGGcccggCCGCgCCGCGCg -3'
miRNA:   3'- -GC-GCCGGUaGA---------------ACCUa----GGUG-GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.