miRNA display CGI


Results 61 - 80 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 106033 0.7 0.538962
Target:  5'- gCGCaGCCG-CUcGcGcgCCGCCCGCGCc -3'
miRNA:   3'- -GCGcCGGUaGAaC-CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 4914 0.7 0.548773
Target:  5'- aCGCGGUCGUUagGGccgCCGcgcuuCCCGCGCc -3'
miRNA:   3'- -GCGCCGGUAGaaCCua-GGU-----GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 83296 0.76 0.250778
Target:  5'- uGCGGCC-UCcu-GAUCgACCCGCGCa -3'
miRNA:   3'- gCGCCGGuAGaacCUAGgUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 121884 0.75 0.288454
Target:  5'- aCGCGGCCugccUGcGAaCCGCCCGCGUg -3'
miRNA:   3'- -GCGCCGGuagaAC-CUaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 144 0.74 0.348446
Target:  5'- gCGCGGCCAUCUUGcuUCCAaacucauuagcauacCCCGCcCa -3'
miRNA:   3'- -GCGCCGGUAGAACcuAGGU---------------GGGCGcG- -5'
6365 5' -58.6 NC_001847.1 + 104496 0.73 0.376751
Target:  5'- gCGCGGCCAguUCUcgGGGUCCA-CgGCGUc -3'
miRNA:   3'- -GCGCCGGU--AGAa-CCUAGGUgGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 50056 0.72 0.453952
Target:  5'- gGCGGCCGc---GGGUCCGCgCGCGg -3'
miRNA:   3'- gCGCCGGUagaaCCUAGGUGgGCGCg -5'
6365 5' -58.6 NC_001847.1 + 10794 0.71 0.481539
Target:  5'- aCGCgGGCCuguUUUUGGGcuaCugCCGCGCg -3'
miRNA:   3'- -GCG-CCGGu--AGAACCUag-GugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 47708 0.71 0.500373
Target:  5'- gGCGGCCG-CcgGGAacgccagcccgUCGCCCGCGCa -3'
miRNA:   3'- gCGCCGGUaGaaCCUa----------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 11688 0.71 0.509912
Target:  5'- gGCGGCCGUCgccGGG-CCaaGCCCG-GCa -3'
miRNA:   3'- gCGCCGGUAGaa-CCUaGG--UGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 127948 0.69 0.63982
Target:  5'- gGCGGCCGcggCUgccuaaagccgaagcGGAUgaaCCGCCCGgGCg -3'
miRNA:   3'- gCGCCGGUa--GAa--------------CCUA---GGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 92210 0.69 0.638812
Target:  5'- gCGuCGGCCG-CUUGGG-CgGCCagcaGCGCg -3'
miRNA:   3'- -GC-GCCGGUaGAACCUaGgUGGg---CGCG- -5'
6365 5' -58.6 NC_001847.1 + 101030 0.7 0.558639
Target:  5'- cCGCGGCCg----GGGUCCcaAUuuGCGCa -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGG--UGggCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61383 0.7 0.578513
Target:  5'- aGCGGCCcgCgccg--CCGCCCgGCGCu -3'
miRNA:   3'- gCGCCGGuaGaaccuaGGUGGG-CGCG- -5'
6365 5' -58.6 NC_001847.1 + 15559 0.69 0.588509
Target:  5'- gCGCGGCCGUC--GGG-CCGCggCCGcCGCu -3'
miRNA:   3'- -GCGCCGGUAGaaCCUaGGUG--GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 61951 0.69 0.598536
Target:  5'- gCGCGGCCcgCgcGGGccgacUCCGCcgCCGCGUc -3'
miRNA:   3'- -GCGCCGGuaGaaCCU-----AGGUG--GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 103717 0.69 0.608587
Target:  5'- cCGCGGCCGcc--GGccgCCGCCCGCcgGCg -3'
miRNA:   3'- -GCGCCGGUagaaCCua-GGUGGGCG--CG- -5'
6365 5' -58.6 NC_001847.1 + 124556 0.69 0.618654
Target:  5'- gCGcCGGCCcgCgcgcgcgggGGggCCGCCgGCGCc -3'
miRNA:   3'- -GC-GCCGGuaGaa-------CCuaGGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61689 0.69 0.628732
Target:  5'- uGCGcCCAUCgcGGuaGUCCAUgCCGCGCg -3'
miRNA:   3'- gCGCcGGUAGaaCC--UAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 19346 0.69 0.628732
Target:  5'- cCGCGGCC-----GGGUCUugCgCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaaCCUAGGugG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.