miRNA display CGI


Results 21 - 40 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 3716 0.69 0.500588
Target:  5'- -cGGcaaUCGcgcgCGCCgGCCACGGcGCGCaCGCg -3'
miRNA:   3'- gaCC---AGCa---GCGG-CGGUGCC-UGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 3877 0.69 0.509864
Target:  5'- -cGG-CGgCGgcCCGUCGCGcGGCGCCGCg -3'
miRNA:   3'- gaCCaGCaGC--GGCGGUGC-CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 3898 0.66 0.674254
Target:  5'- -cGaGcCGUUGCgCGCgguggCGCGGACGCaCGCa -3'
miRNA:   3'- gaC-CaGCAGCG-GCG-----GUGCCUGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 3924 0.68 0.547636
Target:  5'- -cGGUUGcgCGCC-CgCGCuGGCGCCGCg -3'
miRNA:   3'- gaCCAGCa-GCGGcG-GUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 4400 0.74 0.249814
Target:  5'- -cGGUCGcCGCCGUCgacgccgacgGCGGcgagcgcGCGCCGCa -3'
miRNA:   3'- gaCCAGCaGCGGCGG----------UGCC-------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 4917 0.75 0.239648
Target:  5'- -cGGUCGUUaggGCCGCCGCGcuucccgcgcccuccGCGCCGCc -3'
miRNA:   3'- gaCCAGCAG---CGGCGGUGCc--------------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5065 0.68 0.538102
Target:  5'- -cGGUCGggCGCgGCCcaggACGGcgacGCGUCGCc -3'
miRNA:   3'- gaCCAGCa-GCGgCGG----UGCC----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5207 0.69 0.491387
Target:  5'- -cGGcaagCG-CGCCGCgACGGAaGCUGCg -3'
miRNA:   3'- gaCCa---GCaGCGGCGgUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5558 0.77 0.154477
Target:  5'- --aGUCGUCGCCGuCCGCgacggcaaaugccuGGugGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGC-GGUG--------------CCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5618 0.68 0.557223
Target:  5'- -cGGgCGUgGgCGCCGCGGuccCGCgCGCg -3'
miRNA:   3'- gaCCaGCAgCgGCGGUGCCu--GCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 5670 0.66 0.693651
Target:  5'- -cGcGcCGUCGCgCGCgGCGG-CGgCCGCc -3'
miRNA:   3'- gaC-CaGCAGCG-GCGgUGCCuGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 5874 0.72 0.327522
Target:  5'- gUGGUCcagCGCUGCgCGCaGGGCGgCCGCg -3'
miRNA:   3'- gACCAGca-GCGGCG-GUG-CCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 5909 0.66 0.674254
Target:  5'- uUGGUCuGgcaGCCGCUagGCGGAUggGCgGCg -3'
miRNA:   3'- gACCAG-Cag-CGGCGG--UGCCUG--CGgCG- -5'
6366 3' -61.6 NC_001847.1 + 6366 0.68 0.575564
Target:  5'- -cGGgCGUaGCCGCUgcggcagcagaagGCGGcaaGCGCCGCg -3'
miRNA:   3'- gaCCaGCAgCGGCGG-------------UGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 7195 0.66 0.69751
Target:  5'- uUGGagcgCGUCcucgagcgcggcuggGCCGuCCAUGG-CGCUGCa -3'
miRNA:   3'- gACCa---GCAG---------------CGGC-GGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 7243 0.72 0.32047
Target:  5'- gCUGGUCGg-GUgGCUguGCGGGCGCgGCg -3'
miRNA:   3'- -GACCAGCagCGgCGG--UGCCUGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 7352 0.69 0.509864
Target:  5'- gUGGUagcCGUcagcgCGCUGCUGCcGGCGCCGCu -3'
miRNA:   3'- gACCA---GCA-----GCGGCGGUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 8179 0.67 0.605757
Target:  5'- -cGGUCGUUgagGCCggacggaaGCCACucgaGGCGCCGUg -3'
miRNA:   3'- gaCCAGCAG---CGG--------CGGUGc---CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 8388 0.73 0.286921
Target:  5'- gUGGgCGUCuGCCGCguaggcUACGGGCaGCCGCa -3'
miRNA:   3'- gACCaGCAG-CGGCG------GUGCCUG-CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 8456 0.71 0.396081
Target:  5'- -gGGUCGgaggcggCGCCggGCCGgGGGCGgCGCu -3'
miRNA:   3'- gaCCAGCa------GCGG--CGGUgCCUGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.