miRNA display CGI


Results 1 - 20 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 279 0.68 0.519211
Target:  5'- -cGGggGcCGCCGagcccgCGCGGGCGCCGUc -3'
miRNA:   3'- gaCCagCaGCGGCg-----GUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 474 0.66 0.683972
Target:  5'- ---uUCGgCGCCGUCAUGGGUGcCCGCg -3'
miRNA:   3'- gaccAGCaGCGGCGGUGCCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 765 0.7 0.43796
Target:  5'- -aGGcCGgccCGCCGCCgGCGG-CGCCGg -3'
miRNA:   3'- gaCCaGCa--GCGGCGG-UGCCuGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 789 0.68 0.527681
Target:  5'- -nGGccUCGUCGUCGUCcgacgagGCGGgggacgACGCCGCg -3'
miRNA:   3'- gaCC--AGCAGCGGCGG-------UGCC------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 898 0.71 0.396081
Target:  5'- -gGGcCGcCGCgGCCGcCGGcCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGgCGGU-GCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 1021 0.7 0.446637
Target:  5'- -aGGc---CGCCGcCCGCGGcGCGCCGCa -3'
miRNA:   3'- gaCCagcaGCGGC-GGUGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 1094 0.75 0.222952
Target:  5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 1468 0.76 0.198115
Target:  5'- ----aCGUUGCCGCCGCGGcagaGCCGCa -3'
miRNA:   3'- gaccaGCAGCGGCGGUGCCug--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 1706 0.68 0.528625
Target:  5'- -cGG-CGUCgagcacgaucaGCCGCCGCc-GCGCCGCg -3'
miRNA:   3'- gaCCaGCAG-----------CGGCGGUGccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 1954 0.69 0.509864
Target:  5'- -cGGcgcUCGUCcUCGCCGgGcGGCGCCGCc -3'
miRNA:   3'- gaCC---AGCAGcGGCGGUgC-CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 2056 0.7 0.455409
Target:  5'- -aGGccaCG-CGCCGCCgcaGCGGugGCgGCg -3'
miRNA:   3'- gaCCa--GCaGCGGCGG---UGCCugCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 2577 0.68 0.547636
Target:  5'- -cGGgcgccugCG-CgGCCGCCGCGGcCGCaCGCg -3'
miRNA:   3'- gaCCa------GCaG-CGGCGGUGCCuGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 2636 0.66 0.664504
Target:  5'- -cGGgaccgcCGUCGCCGCuUGCGG-CGCCu- -3'
miRNA:   3'- gaCCa-----GCAGCGGCG-GUGCCuGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 2873 0.67 0.635141
Target:  5'- -cGGgCGUCGUCGUCGggcCGGguGCGUCGCc -3'
miRNA:   3'- gaCCaGCAGCGGCGGU---GCC--UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 2926 0.68 0.576533
Target:  5'- -cGGUcCG-CGCCGCCagcGCGGcCGCCu- -3'
miRNA:   3'- gaCCA-GCaGCGGCGG---UGCCuGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 2971 0.66 0.674254
Target:  5'- -cGGcgCGcagCGCCGCCGgGGcCGgCGCu -3'
miRNA:   3'- gaCCa-GCa--GCGGCGGUgCCuGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 3198 0.71 0.39527
Target:  5'- --cGcCGUCGCCGCCAucgcCGGcgcacgugccuccGCGCCGCc -3'
miRNA:   3'- gacCaGCAGCGGCGGU----GCC-------------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 3320 0.71 0.380067
Target:  5'- -cGGgCGcCGCUGCCGCcGGCGCCGg -3'
miRNA:   3'- gaCCaGCaGCGGCGGUGcCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 3527 0.67 0.625339
Target:  5'- -gGGcCGUgGCCGaCUACGGccgcgaGCGCgGCg -3'
miRNA:   3'- gaCCaGCAgCGGC-GGUGCC------UGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 3705 0.67 0.595989
Target:  5'- -cGGcCGcggGCC-CCGCGGcCGCCGCg -3'
miRNA:   3'- gaCCaGCag-CGGcGGUGCCuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.