miRNA display CGI


Results 1 - 20 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 37038 0.81 0.092137
Target:  5'- cCUGGUCGUgGCCGCgcuCAUGGGCGCCu- -3'
miRNA:   3'- -GACCAGCAgCGGCG---GUGCCUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 45507 0.75 0.222952
Target:  5'- -cGGggCGggCGCCGCCGcCGGGCGgCGCg -3'
miRNA:   3'- gaCCa-GCa-GCGGCGGU-GCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 122551 0.75 0.228227
Target:  5'- -cGGUCGcUgGCCGCaCGagugcgaGGGCGCCGCg -3'
miRNA:   3'- gaCCAGC-AgCGGCG-GUg------CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 7195 0.66 0.69751
Target:  5'- uUGGagcgCGUCcucgagcgcggcuggGCCGuCCAUGG-CGCUGCa -3'
miRNA:   3'- gACCa---GCAG---------------CGGC-GGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 61002 0.78 0.14817
Target:  5'- --cGUCGagGCCGCCAUcGGCGCCGCg -3'
miRNA:   3'- gacCAGCagCGGCGGUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5558 0.77 0.154477
Target:  5'- --aGUCGUCGCCGuCCGCgacggcaaaugccuGGugGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGC-GGUG--------------CCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 29442 0.76 0.184397
Target:  5'- gCUGGggCGUggCGCCGcCCGCGGccgaaGCGCCGCc -3'
miRNA:   3'- -GACCa-GCA--GCGGC-GGUGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31871 0.76 0.190691
Target:  5'- -cGG-CGUUGCUGCCggcggagcccgucgcGCGGAUGCCGCc -3'
miRNA:   3'- gaCCaGCAGCGGCGG---------------UGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 53197 0.76 0.202881
Target:  5'- gUGG-CG-CGCCGCCACcucGACGCCGUc -3'
miRNA:   3'- gACCaGCaGCGGCGGUGc--CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 103907 0.75 0.222952
Target:  5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 93627 0.75 0.212713
Target:  5'- -cGGcCGgCGCgGCCGCGGACGuCUGCa -3'
miRNA:   3'- gaCCaGCaGCGgCGGUGCCUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 34118 0.76 0.202881
Target:  5'- -cGGagccugCGgCGCCuGCCGCGGugGCCGCc -3'
miRNA:   3'- gaCCa-----GCaGCGG-CGGUGCCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28464 0.8 0.101953
Target:  5'- aUGGcCGcCGUggcacgacgCGCCGCGGACGCCGCg -3'
miRNA:   3'- gACCaGCaGCG---------GCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 80444 0.75 0.217781
Target:  5'- -cGcGUCGUCcuCC-CCGCGGGCGCCGCc -3'
miRNA:   3'- gaC-CAGCAGc-GGcGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33882 0.79 0.11561
Target:  5'- -aGGagG-CGCCGCCGCGcGugGCCGCg -3'
miRNA:   3'- gaCCagCaGCGGCGGUGC-CugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 104281 0.76 0.198115
Target:  5'- ----aCGUUGCCGCCGCGGcagaGCCGCa -3'
miRNA:   3'- gaccaGCAGCGGCGGUGCCug--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 72989 0.75 0.217781
Target:  5'- -cGG-CGgccuaCGCCGCCGCGGccaugcgcACGCCGCu -3'
miRNA:   3'- gaCCaGCa----GCGGCGGUGCC--------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31414 0.75 0.228227
Target:  5'- gUGGacgcCGUCuggcaGCCGCgGCGGACGUCGCu -3'
miRNA:   3'- gACCa---GCAG-----CGGCGgUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33218 0.78 0.144571
Target:  5'- gUGGcUCGgcuuggCGCCGCgC-CGGGCGCCGCg -3'
miRNA:   3'- gACC-AGCa-----GCGGCG-GuGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33516 0.76 0.180015
Target:  5'- -cGG-CGggCGCCGCCGCGGagGCGCCGg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCC--UGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.