miRNA display CGI


Results 1 - 20 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 116189 1.11 0.00068
Target:  5'- gCUGGUCGUCGCCGCCACGGACGCCGCg -3'
miRNA:   3'- -GACCAGCAGCGGCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 47442 0.83 0.061161
Target:  5'- -cGGcuUCGcCGCCGCCGCGG-CGCCGCa -3'
miRNA:   3'- gaCC--AGCaGCGGCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 119140 0.83 0.067802
Target:  5'- aUGGcgagcUCGUCGgCGCCGCGGcCGCCGCg -3'
miRNA:   3'- gACC-----AGCAGCgGCGGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 79623 0.81 0.089827
Target:  5'- -cGGUCGcC-CCGCgGCGGGCGCCGCc -3'
miRNA:   3'- gaCCAGCaGcGGCGgUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 37038 0.81 0.092137
Target:  5'- cCUGGUCGUgGCCGCgcuCAUGGGCGCCu- -3'
miRNA:   3'- -GACCAGCAgCGGCG---GUGCCUGCGGcg -5'
6366 3' -61.6 NC_001847.1 + 28464 0.8 0.101953
Target:  5'- aUGGcCGcCGUggcacgacgCGCCGCGGACGCCGCg -3'
miRNA:   3'- gACCaGCaGCG---------GCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 116348 0.8 0.108308
Target:  5'- gCUGGcgcgCGcCGCCGCCGCGGAgcucgcgcugucggcCGCCGCc -3'
miRNA:   3'- -GACCa---GCaGCGGCGGUGCCU---------------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33882 0.79 0.11561
Target:  5'- -aGGagG-CGCCGCCGCGcGugGCCGCg -3'
miRNA:   3'- gaCCagCaGCGGCGGUGC-CugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 116158 0.78 0.134247
Target:  5'- -aGG-CGcUgGCgGCCGCGGGCGCCGCg -3'
miRNA:   3'- gaCCaGC-AgCGgCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 84273 0.78 0.141051
Target:  5'- cCUGGcguucUCGUCGgCGCC-CGGGCGCCGa -3'
miRNA:   3'- -GACC-----AGCAGCgGCGGuGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 33218 0.78 0.144571
Target:  5'- gUGGcUCGgcuuggCGCCGCgC-CGGGCGCCGCg -3'
miRNA:   3'- gACC-AGCa-----GCGGCG-GuGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 61002 0.78 0.14817
Target:  5'- --cGUCGagGCCGCCAUcGGCGCCGCg -3'
miRNA:   3'- gacCAGCagCGGCGGUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 5558 0.77 0.154477
Target:  5'- --aGUCGUCGCCGuCCGCgacggcaaaugccuGGugGCCGCg -3'
miRNA:   3'- gacCAGCAGCGGC-GGUG--------------CCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 52327 0.77 0.155615
Target:  5'- -gGGUCGUCGCCGUCGCcuucgccCGCCGCc -3'
miRNA:   3'- gaCCAGCAGCGGCGGUGccu----GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 113160 0.77 0.163396
Target:  5'- -gGGUCGUCGaCCGCgGgCGGcaaccgGCGCCGCg -3'
miRNA:   3'- gaCCAGCAGC-GGCGgU-GCC------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 100360 0.77 0.171526
Target:  5'- -gGGUCGUagcCGCgCGCCGCGGcCGCgGCg -3'
miRNA:   3'- gaCCAGCA---GCG-GCGGUGCCuGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 89583 0.77 0.175725
Target:  5'- gUGGagcgCGaCGCCGCCGCGGugaacGCGCUGCg -3'
miRNA:   3'- gACCa---GCaGCGGCGGUGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33516 0.76 0.180015
Target:  5'- -cGG-CGggCGCCGCCGCGGagGCGCCGg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCC--UGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 29442 0.76 0.184397
Target:  5'- gCUGGggCGUggCGCCGcCCGCGGccgaaGCGCCGCc -3'
miRNA:   3'- -GACCa-GCA--GCGGC-GGUGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 111063 0.76 0.188874
Target:  5'- gUGGUCcucUCGCUGCCGCGGGCcugggcccgGCUGCg -3'
miRNA:   3'- gACCAGc--AGCGGCGGUGCCUG---------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.