miRNA display CGI


Results 21 - 40 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 131961 0.75 0.233607
Target:  5'- gCUGcGcCGUCGCCuGCCGCGaGGCGCUGg -3'
miRNA:   3'- -GAC-CaGCAGCGG-CGGUGC-CUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 122551 0.75 0.228227
Target:  5'- -cGGUCGcUgGCCGCaCGagugcgaGGGCGCCGCg -3'
miRNA:   3'- gaCCAGC-AgCGGCG-GUg------CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 34118 0.76 0.202881
Target:  5'- -cGGagccugCGgCGCCuGCCGCGGugGCCGCc -3'
miRNA:   3'- gaCCa-----GCaGCGG-CGGUGCCugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 33218 0.78 0.144571
Target:  5'- gUGGcUCGgcuuggCGCCGCgC-CGGGCGCCGCg -3'
miRNA:   3'- gACC-AGCa-----GCGGCG-GuGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 81027 0.74 0.268153
Target:  5'- aUGGgCGaCGCCGCCGCGGACuGCgGg -3'
miRNA:   3'- gACCaGCaGCGGCGGUGCCUG-CGgCg -5'
6366 3' -61.6 NC_001847.1 + 11837 0.74 0.250389
Target:  5'- uCUGG-CGUaaggccucuggCGCCGCCcuGCGGGCGgCGCg -3'
miRNA:   3'- -GACCaGCA-----------GCGGCGG--UGCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 45507 0.75 0.222952
Target:  5'- -cGGggCGggCGCCGCCGcCGGGCGgCGCg -3'
miRNA:   3'- gaCCa-GCa-GCGGCGGU-GCCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 33882 0.79 0.11561
Target:  5'- -aGGagG-CGCCGCCGCGcGugGCCGCg -3'
miRNA:   3'- gaCCagCaGCGGCGGUGC-CugCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 4400 0.74 0.249814
Target:  5'- -cGGUCGcCGCCGUCgacgccgacgGCGGcgagcgcGCGCCGCa -3'
miRNA:   3'- gaCCAGCaGCGGCGG----------UGCC-------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28464 0.8 0.101953
Target:  5'- aUGGcCGcCGUggcacgacgCGCCGCGGACGCCGCg -3'
miRNA:   3'- gACCaGCaGCG---------GCGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31414 0.75 0.228227
Target:  5'- gUGGacgcCGUCuggcaGCCGCgGCGGACGUCGCu -3'
miRNA:   3'- gACCa---GCAG-----CGGCGgUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 10379 0.75 0.239094
Target:  5'- -gGGUCGcCGCuCGCgGCGGG-GCCGCu -3'
miRNA:   3'- gaCCAGCaGCG-GCGgUGCCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 80444 0.75 0.217781
Target:  5'- -cGcGUCGUCcuCC-CCGCGGGCGCCGCc -3'
miRNA:   3'- gaC-CAGCAGc-GGcGGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 53197 0.76 0.202881
Target:  5'- gUGG-CG-CGCCGCCACcucGACGCCGUc -3'
miRNA:   3'- gACCaGCaGCGGCGGUGc--CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 29442 0.76 0.184397
Target:  5'- gCUGGggCGUggCGCCGcCCGCGGccgaaGCGCCGCc -3'
miRNA:   3'- -GACCa-GCA--GCGGC-GGUGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 61002 0.78 0.14817
Target:  5'- --cGUCGagGCCGCCAUcGGCGCCGCg -3'
miRNA:   3'- gacCAGCagCGGCGGUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 90235 0.73 0.280553
Target:  5'- -cGGUCGcggcCGCCGCCGCGGccugugacGCGCuCGUu -3'
miRNA:   3'- gaCCAGCa---GCGGCGGUGCC--------UGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 134535 0.74 0.268153
Target:  5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 31452 0.74 0.262121
Target:  5'- gCUGGugaUCGUgGgCGCCAUGGGCGUCGg -3'
miRNA:   3'- -GACC---AGCAgCgGCGGUGCCUGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 53865 0.74 0.250389
Target:  5'- gCUGGcggCGcCGaCCGCCGCGGGgGCgGCg -3'
miRNA:   3'- -GACCa--GCaGC-GGCGGUGCCUgCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.