miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 20518 0.7 0.829403
Target:  5'- cGCGGGCGGggGCCcacugGAAGGacgugaacuUCUCGGCg -3'
miRNA:   3'- aCGUCCGUCaaCGG-----UUUCU---------AGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 22121 0.66 0.965837
Target:  5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 22281 0.68 0.913156
Target:  5'- cGUAGGCAGc-GCCGccGAggCCGACa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuuCUagGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 22601 0.66 0.958572
Target:  5'- gUGCuucucGGCAGUcaucaggGCCAAAGGaaaaucggUCCCAGg -3'
miRNA:   3'- -ACGu----CCGUCAa------CGGUUUCU--------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 22837 0.7 0.838171
Target:  5'- cGCcgAGGUAGUUGUCGAAGAUgCagcaCGACg -3'
miRNA:   3'- aCG--UCCGUCAACGGUUUCUA-Gg---GUUG- -5'
6367 3' -52.1 NC_001847.1 + 23967 0.66 0.967175
Target:  5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3'
miRNA:   3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 24300 0.67 0.930675
Target:  5'- gUGCAGGCccuGGaaGCCGAug--CCCAGCg -3'
miRNA:   3'- -ACGUCCG---UCaaCGGUUucuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 24825 0.67 0.930675
Target:  5'- gGCgAGGUAGcgGUCAAAGAgcaggUCCGGCa -3'
miRNA:   3'- aCG-UCCGUCaaCGGUUUCUa----GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 25128 0.66 0.954569
Target:  5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 25182 0.67 0.935981
Target:  5'- aGCAGGUAGcagcugGCCAgcGAgCCCcGCg -3'
miRNA:   3'- aCGUCCGUCaa----CGGUuuCUaGGGuUG- -5'
6367 3' -52.1 NC_001847.1 + 26999 0.66 0.954569
Target:  5'- gGCGGcGCGGUUGCCGua---CUCGGCg -3'
miRNA:   3'- aCGUC-CGUCAACGGUuucuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 27025 0.66 0.958572
Target:  5'- cGCAGGCGGcUGCCAgaaaggaaaAGGAUacaagagaggcCCgCAGCc -3'
miRNA:   3'- aCGUCCGUCaACGGU---------UUCUA-----------GG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 29506 0.66 0.972155
Target:  5'- cGCGGGCGGcgcuucgGCCGcAGAgcucgCCCGcGCg -3'
miRNA:   3'- aCGUCCGUCaa-----CGGUuUCUa----GGGU-UG- -5'
6367 3' -52.1 NC_001847.1 + 30122 0.66 0.958572
Target:  5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3'
miRNA:   3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 31108 0.66 0.969111
Target:  5'- gGCAGcGCGGUggcaUGCCuucGGUCCUcGCu -3'
miRNA:   3'- aCGUC-CGUCA----ACGGuuuCUAGGGuUG- -5'
6367 3' -52.1 NC_001847.1 + 31112 0.69 0.886111
Target:  5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 31427 0.68 0.919262
Target:  5'- gGCGGGCGGcgGCCGgcGG-CCgCGGCg -3'
miRNA:   3'- aCGUCCGUCaaCGGUuuCUaGG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 32212 0.67 0.950312
Target:  5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3'
miRNA:   3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 32991 0.68 0.900152
Target:  5'- gGCGGGCAGggcgGCCGGAGcggCCgGGg -3'
miRNA:   3'- aCGUCCGUCaa--CGGUUUCua-GGgUUg -5'
6367 3' -52.1 NC_001847.1 + 34522 0.7 0.85507
Target:  5'- aGcCAGGCGGUcGCCAGGG--CCCGAg -3'
miRNA:   3'- aC-GUCCGUCAaCGGUUUCuaGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.