miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 1107 0.66 0.958572
Target:  5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3'
miRNA:   3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 3569 0.68 0.900152
Target:  5'- aGCAGGCGc--GCCAGcugcAGGUCCgGGCc -3'
miRNA:   3'- aCGUCCGUcaaCGGUU----UCUAGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 4208 0.66 0.954569
Target:  5'- cGCAGGCA---GCCAAAGcccugcgcgGUgCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGUUUC---------UAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 4324 0.7 0.829403
Target:  5'- cUGCGGGUAGUgcuccGCCAuguAGggCgCCAGCu -3'
miRNA:   3'- -ACGUCCGUCAa----CGGUu--UCuaG-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 6871 0.67 0.930675
Target:  5'- cGCGGGUAGggccUUGCCGAGGAgcagugCgUCGGCg -3'
miRNA:   3'- aCGUCCGUC----AACGGUUUCUa-----G-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 7418 0.68 0.919262
Target:  5'- gGCAcgcGGCGGcUUGCCAAGGcgcaGUCgCUAGCg -3'
miRNA:   3'- aCGU---CCGUC-AACGGUUUC----UAG-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 7746 0.75 0.593174
Target:  5'- cGgAGGCGGcgGCCAGGGcaagCCCGACg -3'
miRNA:   3'- aCgUCCGUCaaCGGUUUCua--GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 9740 0.68 0.913156
Target:  5'- cGCcgGGGCAGUcGCCGucGGUCCaccuCGACc -3'
miRNA:   3'- aCG--UCCGUCAaCGGUuuCUAGG----GUUG- -5'
6367 3' -52.1 NC_001847.1 + 9931 0.7 0.820435
Target:  5'- gGCAGGCGGcUGCCAGcgucugggacucGGAcccCCCAAa -3'
miRNA:   3'- aCGUCCGUCaACGGUU------------UCUa--GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 11787 0.7 0.829403
Target:  5'- gGCGGGCAGUggcGCUuucGA-CCCGGCg -3'
miRNA:   3'- aCGUCCGUCAa--CGGuuuCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 14541 0.67 0.930675
Target:  5'- cUGCccGCGGUgccGCCGuAGAUgCCGACg -3'
miRNA:   3'- -ACGucCGUCAa--CGGUuUCUAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 14684 0.71 0.801936
Target:  5'- gUGCAGGCAGgaGCgAAAGGcgucguUCgCGACg -3'
miRNA:   3'- -ACGUCCGUCaaCGgUUUCU------AGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 15145 0.66 0.965837
Target:  5'- gGCAGcGCGcuguaguugacGUUGCCAAAGG--CCGGCa -3'
miRNA:   3'- aCGUC-CGU-----------CAACGGUUUCUagGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 15894 0.68 0.906785
Target:  5'- cGCGGGCGcc-GCCAuaaucaGUCCCAGCu -3'
miRNA:   3'- aCGUCCGUcaaCGGUuuc---UAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 16787 0.7 0.824046
Target:  5'- cGCAcGGCGGggucaucgggcagGCCAAAGAgCCCAAa -3'
miRNA:   3'- aCGU-CCGUCaa-----------CGGUUUCUaGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 17039 0.66 0.956201
Target:  5'- cGCuGGCGGUccggaacaugucgcuUucGCUAAAGAgCCCGACg -3'
miRNA:   3'- aCGuCCGUCA---------------A--CGGUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 17063 0.67 0.945798
Target:  5'- gGCGGGCGGUaaacgGCCGGc-GUgCCAGCc -3'
miRNA:   3'- aCGUCCGUCAa----CGGUUucUAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 18024 0.7 0.838171
Target:  5'- gGgGGGC-GUUgcGCCGGuGGUCCCAGCg -3'
miRNA:   3'- aCgUCCGuCAA--CGGUUuCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 18348 0.67 0.941021
Target:  5'- cGCAGucGCGGUcGCCcAAGAUCgUCGGCg -3'
miRNA:   3'- aCGUC--CGUCAaCGGuUUCUAG-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 18734 0.69 0.863186
Target:  5'- aGCGGGCGGUUGauucuCCAGaggugcgugugcAGGUCCUcGCg -3'
miRNA:   3'- aCGUCCGUCAAC-----GGUU------------UCUAGGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.