miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 7746 0.75 0.593174
Target:  5'- cGgAGGCGGcgGCCAGGGcaagCCCGACg -3'
miRNA:   3'- aCgUCCGUCaaCGGUUUCua--GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 106382 0.68 0.900152
Target:  5'- aGCAGGCGc--GCCAGcugcAGGUCCgGGCc -3'
miRNA:   3'- aCGUCCGUcaaCGGUU----UCUAGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 22281 0.68 0.913156
Target:  5'- cGUAGGCAGc-GCCGccGAggCCGACa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuuCUagGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 29506 0.66 0.972155
Target:  5'- cGCGGGCGGcgcuucgGCCGcAGAgcucgCCCGcGCg -3'
miRNA:   3'- aCGUCCGUCaa-----CGGUuUCUa----GGGU-UG- -5'
6367 3' -52.1 NC_001847.1 + 118140 0.73 0.679487
Target:  5'- cUGCugaucGGCGccGUUGCCAAGGAcgUCCUGACg -3'
miRNA:   3'- -ACGu----CCGU--CAACGGUUUCU--AGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 101007 0.73 0.70083
Target:  5'- cGCGgcGGCAGUuacUGCCGccgccgcggccGGGGUCCCAAUu -3'
miRNA:   3'- aCGU--CCGUCA---ACGGU-----------UUCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 9931 0.7 0.820435
Target:  5'- gGCAGGCGGcUGCCAGcgucugggacucGGAcccCCCAAa -3'
miRNA:   3'- aCGUCCGUCaACGGUU------------UCUa--GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 81982 0.7 0.820435
Target:  5'- cGCGGGCGG-UGCuCGGAGAcUUCAGCu -3'
miRNA:   3'- aCGUCCGUCaACG-GUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 20518 0.7 0.829403
Target:  5'- cGCGGGCGGggGCCcacugGAAGGacgugaacuUCUCGGCg -3'
miRNA:   3'- aCGUCCGUCaaCGG-----UUUCU---------AGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 54245 0.68 0.900152
Target:  5'- cGUGGGCAGcgcUGCgGuGGcgCCCGACg -3'
miRNA:   3'- aCGUCCGUCa--ACGgUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 18024 0.7 0.838171
Target:  5'- gGgGGGC-GUUgcGCCGGuGGUCCCAGCg -3'
miRNA:   3'- aCgUCCGuCAA--CGGUUuCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 11787 0.7 0.829403
Target:  5'- gGCGGGCAGUggcGCUuucGA-CCCGGCg -3'
miRNA:   3'- aCGUCCGUCAa--CGGuuuCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 41820 0.74 0.603944
Target:  5'- cGCGGGCGGgcGgCGcGGGUCCCAGg -3'
miRNA:   3'- aCGUCCGUCaaCgGUuUCUAGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 133925 0.69 0.886111
Target:  5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 47597 0.74 0.625548
Target:  5'- gGCcGGCGGcagGUCGcAGGAUCCCAGCg -3'
miRNA:   3'- aCGuCCGUCaa-CGGU-UUCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 4324 0.7 0.829403
Target:  5'- cUGCGGGUAGUgcuccGCCAuguAGggCgCCAGCu -3'
miRNA:   3'- -ACGUCCGUCAa----CGGUu--UCuaG-GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 96572 0.69 0.893259
Target:  5'- cUGCuGGCcGUgUGCCuGGGcgCCCGGCg -3'
miRNA:   3'- -ACGuCCGuCA-ACGGuUUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 34608 0.68 0.906785
Target:  5'- gGCGcGGCGGcgcGCCGAGGAagUCCGGCg -3'
miRNA:   3'- aCGU-CCGUCaa-CGGUUUCUa-GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 60193 0.73 0.657971
Target:  5'- uUGCGGGCAGUUgaugacGCCGAcGAaaaacagCCCGGCg -3'
miRNA:   3'- -ACGUCCGUCAA------CGGUUuCUa------GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 102547 0.71 0.76296
Target:  5'- -cCAGGCAGaUGCagcacGAUCCCAGCu -3'
miRNA:   3'- acGUCCGUCaACGguuu-CUAGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.