miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 134169 0.66 0.972155
Target:  5'- gUGCGGGCcGgcGCau-AGAcgCCCGGCg -3'
miRNA:   3'- -ACGUCCGuCaaCGguuUCUa-GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 25128 0.66 0.954569
Target:  5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 4208 0.66 0.954569
Target:  5'- cGCAGGCA---GCCAAAGcccugcgcgGUgCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGUUUC---------UAgGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 29506 0.66 0.972155
Target:  5'- cGCGGGCGGcgcuucgGCCGcAGAgcucgCCCGcGCg -3'
miRNA:   3'- aCGUCCGUCaa-----CGGUuUCUa----GGGU-UG- -5'
6367 3' -52.1 NC_001847.1 + 127941 0.66 0.954569
Target:  5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 26999 0.66 0.954569
Target:  5'- gGCGGcGCGGUUGCCGua---CUCGGCg -3'
miRNA:   3'- aCGUC-CGUCAACGGUuucuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 22601 0.66 0.958572
Target:  5'- gUGCuucucGGCAGUcaucaggGCCAAAGGaaaaucggUCCCAGg -3'
miRNA:   3'- -ACGu----CCGUCAa------CGGUUUCU--------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 27025 0.66 0.958572
Target:  5'- cGCAGGCGGcUGCCAgaaaggaaaAGGAUacaagagaggcCCgCAGCc -3'
miRNA:   3'- aCGUCCGUCaACGGU---------UUCUA-----------GG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 47550 0.66 0.958572
Target:  5'- aGCAcGGCGGgcG-CGGGGAgCCCGGCg -3'
miRNA:   3'- aCGU-CCGUCaaCgGUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 17039 0.66 0.956201
Target:  5'- cGCuGGCGGUccggaacaugucgcuUucGCUAAAGAgCCCGACg -3'
miRNA:   3'- aCGuCCGUCA---------------A--CGGUUUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 30122 0.66 0.958572
Target:  5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3'
miRNA:   3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 115083 0.66 0.958572
Target:  5'- cGCAGGCAGcgagcgcauuuUUGCCc--GcgCCCAGg -3'
miRNA:   3'- aCGUCCGUC-----------AACGGuuuCuaGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 64269 0.66 0.972155
Target:  5'- cGCAGGCGGUUuGUac-AGc-CCCAGCg -3'
miRNA:   3'- aCGUCCGUCAA-CGguuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 47525 0.66 0.972155
Target:  5'- cGCAGccCGGgcGCCAAAGccgccGUCUCAACg -3'
miRNA:   3'- aCGUCc-GUCaaCGGUUUC-----UAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 23967 0.66 0.967175
Target:  5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3'
miRNA:   3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 42741 0.66 0.965837
Target:  5'- cGCGGGCGGcgggGCgGAcagcAGAUCCagGACg -3'
miRNA:   3'- aCGUCCGUCaa--CGgUU----UCUAGGg-UUG- -5'
6367 3' -52.1 NC_001847.1 + 22121 0.66 0.965837
Target:  5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 15145 0.66 0.965837
Target:  5'- gGCAGcGCGcuguaguugacGUUGCCAAAGG--CCGGCa -3'
miRNA:   3'- aCGUC-CGU-----------CAACGGUUUCUagGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 127294 0.66 0.962326
Target:  5'- cUGCAGGCGccaccGgcggUGCCGGAGAcacggcgaCCGGCg -3'
miRNA:   3'- -ACGUCCGU-----Ca---ACGGUUUCUag------GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 1107 0.66 0.958572
Target:  5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3'
miRNA:   3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.