Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6367 | 3' | -52.1 | NC_001847.1 | + | 114925 | 1.11 | 0.003468 |
Target: 5'- cUGCAGGCAGUUGCCAAAGAUCCCAACg -3' miRNA: 3'- -ACGUCCGUCAACGGUUUCUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 124266 | 0.76 | 0.529487 |
Target: 5'- cGCAGGCGGUcUGCCuGGGcgCCCGc- -3' miRNA: 3'- aCGUCCGUCA-ACGGuUUCuaGGGUug -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 71081 | 0.75 | 0.571735 |
Target: 5'- gGCgAGGCGGccgGCCAGGGcgUCCAGCg -3' miRNA: 3'- aCG-UCCGUCaa-CGGUUUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 7746 | 0.75 | 0.593174 |
Target: 5'- cGgAGGCGGcgGCCAGGGcaagCCCGACg -3' miRNA: 3'- aCgUCCGUCaaCGGUUUCua--GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 41820 | 0.74 | 0.603944 |
Target: 5'- cGCGGGCGGgcGgCGcGGGUCCCAGg -3' miRNA: 3'- aCGUCCGUCaaCgGUuUCUAGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 47597 | 0.74 | 0.625548 |
Target: 5'- gGCcGGCGGcagGUCGcAGGAUCCCAGCg -3' miRNA: 3'- aCGuCCGUCaa-CGGU-UUCUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 52195 | 0.74 | 0.636363 |
Target: 5'- cGCAGGCGGccugGCCGcGGGUCgCGGCc -3' miRNA: 3'- aCGUCCGUCaa--CGGUuUCUAGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 60193 | 0.73 | 0.657971 |
Target: 5'- uUGCGGGCAGUUgaugacGCCGAcGAaaaacagCCCGGCg -3' miRNA: 3'- -ACGUCCGUCAA------CGGUUuCUa------GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 118140 | 0.73 | 0.679487 |
Target: 5'- cUGCugaucGGCGccGUUGCCAAGGAcgUCCUGACg -3' miRNA: 3'- -ACGu----CCGU--CAACGGUUUCU--AGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 101007 | 0.73 | 0.70083 |
Target: 5'- cGCGgcGGCAGUuacUGCCGccgccgcggccGGGGUCCCAAUu -3' miRNA: 3'- aCGU--CCGUCA---ACGGU-----------UUCUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 70699 | 0.72 | 0.742652 |
Target: 5'- cGCGGGCGGcgGCgGGGGcgCCCGcgGCg -3' miRNA: 3'- aCGUCCGUCaaCGgUUUCuaGGGU--UG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 52914 | 0.72 | 0.752866 |
Target: 5'- cGCGGGCAGcgGCuCGGGGcgCCCGc- -3' miRNA: 3'- aCGUCCGUCaaCG-GUUUCuaGGGUug -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 102547 | 0.71 | 0.76296 |
Target: 5'- -cCAGGCAGaUGCagcacGAUCCCAGCu -3' miRNA: 3'- acGUCCGUCaACGguuu-CUAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 14684 | 0.71 | 0.801936 |
Target: 5'- gUGCAGGCAGgaGCgAAAGGcgucguUCgCGACg -3' miRNA: 3'- -ACGUCCGUCaaCGgUUUCU------AGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 9931 | 0.7 | 0.820435 |
Target: 5'- gGCAGGCGGcUGCCAGcgucugggacucGGAcccCCCAAa -3' miRNA: 3'- aCGUCCGUCaACGGUU------------UCUa--GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 81982 | 0.7 | 0.820435 |
Target: 5'- cGCGGGCGG-UGCuCGGAGAcUUCAGCu -3' miRNA: 3'- aCGUCCGUCaACG-GUUUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 119574 | 0.7 | 0.820435 |
Target: 5'- cUGCGGGCAGcggcgGCCGcGG--CCCGACg -3' miRNA: 3'- -ACGUCCGUCaa---CGGUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 16787 | 0.7 | 0.824046 |
Target: 5'- cGCAcGGCGGggucaucgggcagGCCAAAGAgCCCAAa -3' miRNA: 3'- aCGU-CCGUCaa-----------CGGUUUCUaGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 4324 | 0.7 | 0.829403 |
Target: 5'- cUGCGGGUAGUgcuccGCCAuguAGggCgCCAGCu -3' miRNA: 3'- -ACGUCCGUCAa----CGGUu--UCuaG-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 11787 | 0.7 | 0.829403 |
Target: 5'- gGCGGGCAGUggcGCUuucGA-CCCGGCg -3' miRNA: 3'- aCGUCCGUCAa--CGGuuuCUaGGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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