miRNA display CGI


Results 41 - 60 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 59581 0.66 0.789328
Target:  5'- uUUGCCGGCGcUCacgGGCAGCUcgGCCGCc- -3'
miRNA:   3'- gAGCGGUUGC-AG---CUGUCGG--CGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 53603 0.66 0.789328
Target:  5'- --gGCCGGCGagcuCGGCCGCCGaaCGGa -3'
miRNA:   3'- gagCGGUUGCagcuGUCGGCGGC--GCC- -5'
6368 3' -59.3 NC_001847.1 + 67633 0.66 0.789328
Target:  5'- -gCGCCGGCGgaGACGGCgGCgGCu- -3'
miRNA:   3'- gaGCGGUUGCagCUGUCGgCGgCGcc -5'
6368 3' -59.3 NC_001847.1 + 57070 0.66 0.789328
Target:  5'- gCUCaaccCCAGCG-CGGCGGCCagcGCUGCGc -3'
miRNA:   3'- -GAGc---GGUUGCaGCUGUCGG---CGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 74429 0.66 0.789328
Target:  5'- gUCGUgGAgGUCGugGCGGCgcacgaCGCCGUGGc -3'
miRNA:   3'- gAGCGgUUgCAGC--UGUCG------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 125521 0.66 0.789328
Target:  5'- --gGCCGGCG-CGGCGGCgGgCGCa- -3'
miRNA:   3'- gagCGGUUGCaGCUGUCGgCgGCGcc -5'
6368 3' -59.3 NC_001847.1 + 97918 0.66 0.789328
Target:  5'- -cCGCCGgguCGUCcGC-GCCGCCGCc- -3'
miRNA:   3'- gaGCGGUu--GCAGcUGuCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 100092 0.66 0.789328
Target:  5'- --gGCgAACGUCaGCAGCCccGUCGCGa -3'
miRNA:   3'- gagCGgUUGCAGcUGUCGG--CGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 101372 0.66 0.789328
Target:  5'- -gCGCUuGCGccgCGGgGGCUGCCcGCGGc -3'
miRNA:   3'- gaGCGGuUGCa--GCUgUCGGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 78383 0.66 0.789328
Target:  5'- aUCGCggcgCAugGcCGAgGaccccGCCGCUGCGGg -3'
miRNA:   3'- gAGCG----GUugCaGCUgU-----CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 17077 0.66 0.789328
Target:  5'- --gGCCGGCGU-GcCAGCCGCguaaaaGCGGc -3'
miRNA:   3'- gagCGGUUGCAgCuGUCGGCGg-----CGCC- -5'
6368 3' -59.3 NC_001847.1 + 28044 0.66 0.789328
Target:  5'- -aCGCCAGaCG-CGGC-GCUGCUgGCGGa -3'
miRNA:   3'- gaGCGGUU-GCaGCUGuCGGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 73183 0.66 0.789328
Target:  5'- -gCGCCGGCGggcaCGGCgcgcgGGCagGCUGCGGu -3'
miRNA:   3'- gaGCGGUUGCa---GCUG-----UCGg-CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 116448 0.66 0.789328
Target:  5'- -gCGCUGGCGgUGACgcgGGCCguGCUGCGGg -3'
miRNA:   3'- gaGCGGUUGCaGCUG---UCGG--CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 129533 0.66 0.789328
Target:  5'- gUCGCCAc---CGACuguaccuCCGCCGCGGc -3'
miRNA:   3'- gAGCGGUugcaGCUGuc-----GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3851 0.66 0.789328
Target:  5'- -cCGCCccaGACGUaGACGG-CGCCGgGGc -3'
miRNA:   3'- gaGCGG---UUGCAgCUGUCgGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 55339 0.66 0.789328
Target:  5'- aUgGCCGcuCG-CGGCGGUgcugaacgCGCCGCGGg -3'
miRNA:   3'- gAgCGGUu-GCaGCUGUCG--------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 70287 0.66 0.789328
Target:  5'- -gCGCCuggcGGgGUCG-CGGCgCGCCGCGc -3'
miRNA:   3'- gaGCGG----UUgCAGCuGUCG-GCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 104911 0.66 0.789328
Target:  5'- --gGCCcGCG-CGGCGGCgGgCCGCGa -3'
miRNA:   3'- gagCGGuUGCaGCUGUCGgC-GGCGCc -5'
6368 3' -59.3 NC_001847.1 + 67982 0.66 0.789328
Target:  5'- gUCGaCCGGCGgcuuggggCGGCcgguauuacGCCGCCGuCGGa -3'
miRNA:   3'- gAGC-GGUUGCa-------GCUGu--------CGGCGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.