miRNA display CGI


Results 21 - 40 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 2868 0.68 0.674704
Target:  5'- aCUCGCgGGCGUCGuCGucgggccgggugcGUCGCCGUucGGg -3'
miRNA:   3'- -GAGCGgUUGCAGCuGU-------------CGGCGGCG--CC- -5'
6368 3' -59.3 NC_001847.1 + 2935 0.75 0.311203
Target:  5'- -cCGCCAGCGcggccgccuccagcgCGGCGGCCGCCuCGGc -3'
miRNA:   3'- gaGCGGUUGCa--------------GCUGUCGGCGGcGCC- -5'
6368 3' -59.3 NC_001847.1 + 2983 0.66 0.798128
Target:  5'- -cCGCCGGgGcCGGCgcuggAGCCGCgCGCGc -3'
miRNA:   3'- gaGCGGUUgCaGCUG-----UCGGCG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 3075 0.72 0.453801
Target:  5'- -cCGCCAgcGCGUcCGGCGcGCagGCCGCGGc -3'
miRNA:   3'- gaGCGGU--UGCA-GCUGU-CGg-CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3103 0.68 0.665806
Target:  5'- --nGCCGGCaggCcGCGGcCCGCCGCGGc -3'
miRNA:   3'- gagCGGUUGca-GcUGUC-GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3152 0.73 0.393789
Target:  5'- -gCGCCGGCGgcgCGGCgGGCCGCCuccagcgccucGCGGc -3'
miRNA:   3'- gaGCGGUUGCa--GCUG-UCGGCGG-----------CGCC- -5'
6368 3' -59.3 NC_001847.1 + 3192 0.76 0.257023
Target:  5'- uCUCGCCGcCGUCGccgccaucgccggcGCAcgugccuccgcGCCGCCGCGGc -3'
miRNA:   3'- -GAGCGGUuGCAGC--------------UGU-----------CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3210 0.74 0.346622
Target:  5'- -cCGCCAGC-UCGcGCAGCCGCuCGCGc -3'
miRNA:   3'- gaGCGGUUGcAGC-UGUCGGCG-GCGCc -5'
6368 3' -59.3 NC_001847.1 + 3250 0.71 0.499565
Target:  5'- gCUCGCCGGCGgcaggggCGcCGG-CGCCGCGcGg -3'
miRNA:   3'- -GAGCGGUUGCa------GCuGUCgGCGGCGC-C- -5'
6368 3' -59.3 NC_001847.1 + 3350 0.74 0.361886
Target:  5'- -aUGCCGACGcUGcCGGCCGCCGCa- -3'
miRNA:   3'- gaGCGGUUGCaGCuGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 3528 0.68 0.645965
Target:  5'- --gGCCGugGcCGACuacGGCCGCgagCGCGGc -3'
miRNA:   3'- gagCGGUugCaGCUG---UCGGCG---GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3723 0.7 0.556987
Target:  5'- -cCGCC-GCGUagCGcGCGGCCGCCucGCGGa -3'
miRNA:   3'- gaGCGGuUGCA--GC-UGUCGGCGG--CGCC- -5'
6368 3' -59.3 NC_001847.1 + 3763 0.66 0.76216
Target:  5'- uUCGUCGcCGUCGAgCAGCCcggGCGGg -3'
miRNA:   3'- gAGCGGUuGCAGCU-GUCGGcggCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3810 0.66 0.752875
Target:  5'- --gGCCgGGCGgCGGCGGCgCGCUGcCGGg -3'
miRNA:   3'- gagCGG-UUGCaGCUGUCG-GCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 3843 0.71 0.504257
Target:  5'- cCUCGCCAgaaggcgucagcaGCGggcccuccagcggCGGCGGCCcgucgcgcggcGCCGCGGc -3'
miRNA:   3'- -GAGCGGU-------------UGCa------------GCUGUCGG-----------CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3851 0.66 0.789328
Target:  5'- -cCGCCccaGACGUaGACGG-CGCCGgGGc -3'
miRNA:   3'- gaGCGG---UUGCAgCUGUCgGCGGCgCC- -5'
6368 3' -59.3 NC_001847.1 + 3931 0.7 0.556987
Target:  5'- -gCGCCcGCGcUGGC-GCCGCgGCGGg -3'
miRNA:   3'- gaGCGGuUGCaGCUGuCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3966 0.67 0.724451
Target:  5'- -gCGCCAgcGCGagGugGGCCGUgagcacgccagCGCGGc -3'
miRNA:   3'- gaGCGGU--UGCagCugUCGGCG-----------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3981 0.67 0.705114
Target:  5'- -gCGCCGGgGgccgggCGcGCGGCC-CCGCGGg -3'
miRNA:   3'- gaGCGGUUgCa-----GC-UGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4295 0.69 0.59631
Target:  5'- -gCGCCGGCGccuugguacUCG-CGcGCCGCCuGCGGg -3'
miRNA:   3'- gaGCGGUUGC---------AGCuGU-CGGCGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.