miRNA display CGI


Results 1 - 20 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 427 0.68 0.655894
Target:  5'- --gGCgGGCGggCGGCGGCgGCgGCGGc -3'
miRNA:   3'- gagCGgUUGCa-GCUGUCGgCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 457 0.69 0.586426
Target:  5'- -gCGgCGGCGgCGGCGGCgGCgGCGGc -3'
miRNA:   3'- gaGCgGUUGCaGCUGUCGgCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 799 0.71 0.490242
Target:  5'- gUCGuCCGACGaggCGGgGGacgaCGCCGCGGa -3'
miRNA:   3'- gAGC-GGUUGCa--GCUgUCg---GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 875 0.75 0.303639
Target:  5'- -aCGCgCGGCGgCGGCccgcgccggGGCCGCCGCGGc -3'
miRNA:   3'- gaGCG-GUUGCaGCUG---------UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 979 0.71 0.508967
Target:  5'- --gGCCGGCGg-GGCuuCCGCCGCGGc -3'
miRNA:   3'- gagCGGUUGCagCUGucGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 1097 0.75 0.283734
Target:  5'- -gCGCCGcggccGCGggCGGC-GCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU-----UGCa-GCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 1450 0.67 0.705114
Target:  5'- gUgGCCAcCGUguagCGcACGuuGCCGCCGCGGc -3'
miRNA:   3'- gAgCGGUuGCA----GC-UGU--CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 1599 0.69 0.586426
Target:  5'- gCUCggGCCAGCGcgCGGC-GCacugCGCCGCGGc -3'
miRNA:   3'- -GAG--CGGUUGCa-GCUGuCG----GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 1694 0.71 0.470933
Target:  5'- uCUCGggguCCAcgGCGUCGAgcacgauCAGCCGCCGCc- -3'
miRNA:   3'- -GAGC----GGU--UGCAGCU-------GUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 1901 0.75 0.303639
Target:  5'- -gCGCCGcgagcGCGUgCGAgAGcCCGCCGCGGc -3'
miRNA:   3'- gaGCGGU-----UGCA-GCUgUC-GGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 1964 0.67 0.743489
Target:  5'- cCUCGCCGGg--CGGC-GCCGCCaGCGc -3'
miRNA:   3'- -GAGCGGUUgcaGCUGuCGGCGG-CGCc -5'
6368 3' -59.3 NC_001847.1 + 2066 0.68 0.685543
Target:  5'- -cCGCCGcaGCGguggCGGCGagcGCC-CCGCGGg -3'
miRNA:   3'- gaGCGGU--UGCa---GCUGU---CGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 2098 0.66 0.789328
Target:  5'- --gGCCcGCG-CGGCGGCgGgCCGCGa -3'
miRNA:   3'- gagCGGuUGCaGCUGUCGgC-GGCGCc -5'
6368 3' -59.3 NC_001847.1 + 2197 0.66 0.76216
Target:  5'- -gCGCCGcgaccuCGgggCGGCAGUaggccgccagCGCCGCGGc -3'
miRNA:   3'- gaGCGGUu-----GCa--GCUGUCG----------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 2284 0.72 0.444921
Target:  5'- --aGCCGcCGUCGGCggcggGGCCGCCggGCGGc -3'
miRNA:   3'- gagCGGUuGCAGCUG-----UCGGCGG--CGCC- -5'
6368 3' -59.3 NC_001847.1 + 2356 0.7 0.566759
Target:  5'- -gCGCCGgcccggccGCGUCGGCGGCgGCgGCu- -3'
miRNA:   3'- gaGCGGU--------UGCAGCUGUCGgCGgCGcc -5'
6368 3' -59.3 NC_001847.1 + 2574 0.76 0.277332
Target:  5'- -gCGCgGGCGccugCG-CGGCCGCCGCGGc -3'
miRNA:   3'- gaGCGgUUGCa---GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 2766 0.72 0.444921
Target:  5'- -gCGCCGGCGcCGGCGcccCCGCCgGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGUc--GGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 2815 0.7 0.566759
Target:  5'- -cCGCCAgccGCGcCGGCAccuCCGCCgGCGGg -3'
miRNA:   3'- gaGCGGU---UGCaGCUGUc--GGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 2860 0.73 0.37761
Target:  5'- -gCGCCAGCGcccaggcCGACgcgcgGGCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCa------GCUG-----UCGGCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.