miRNA display CGI


Results 1 - 20 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 19633 0.83 0.099121
Target:  5'- -gCGCCGGCGUCGGCgcgcGGCCGCuUGCGGg -3'
miRNA:   3'- gaGCGGUUGCAGCUG----UCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 62104 0.76 0.258818
Target:  5'- uUCGCCAGCaGguuguccgCGGCcGCUGCCGCGGc -3'
miRNA:   3'- gAGCGGUUG-Ca-------GCUGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 105748 0.76 0.271669
Target:  5'- -cCGCCAGCGcggccgccuccagcgCGGCGGCCGCCucgGCGGc -3'
miRNA:   3'- gaGCGGUUGCa--------------GCUGUCGGCGG---CGCC- -5'
6368 3' -59.3 NC_001847.1 + 101937 0.66 0.798128
Target:  5'- aUCGCCAucacguagucCGUC-AUGGCCGCgagcuCGCGGg -3'
miRNA:   3'- gAGCGGUu---------GCAGcUGUCGGCG-----GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132387 0.79 0.16408
Target:  5'- -gCGCCGGCGcCGGC-GCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGuCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 69081 0.78 0.190043
Target:  5'- gCUCGCC-GCGUCuGGC-GCCGCgCGCGGa -3'
miRNA:   3'- -GAGCGGuUGCAG-CUGuCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 27486 0.78 0.1966
Target:  5'- -aCGCCGGCuUCGGCGgcagaggccucggccGCCGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGcAGCUGU---------------CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4524 0.78 0.204334
Target:  5'- -gCGCaCGACGUgccucgCGGCGGCCGCcCGCGGg -3'
miRNA:   3'- gaGCG-GUUGCA------GCUGUCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 33506 0.77 0.219548
Target:  5'- -gCGCgGGCGgCGGCGggcGCCGCCGCGGa -3'
miRNA:   3'- gaGCGgUUGCaGCUGU---CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 3192 0.76 0.257023
Target:  5'- uCUCGCCGcCGUCGccgccaucgccggcGCAcgugccuccgcGCCGCCGCGGc -3'
miRNA:   3'- -GAGCGGUuGCAGC--------------UGU-----------CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132788 0.77 0.235717
Target:  5'- -cCGCCGACG-CGGCcgGGCCGgCGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUG--UCGGCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 31047 0.77 0.214372
Target:  5'- --gGCCGACGUCG-CGGUCGCCGCu- -3'
miRNA:   3'- gagCGGUUGCAGCuGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 134235 0.81 0.124648
Target:  5'- -gCGCCGGCGggCGGCGGCCggcgGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGCa-GCUGUCGG----CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 25699 0.77 0.241325
Target:  5'- cCUCGCCGACGUa---AGCCGCCacuGCGGc -3'
miRNA:   3'- -GAGCGGUUGCAgcugUCGGCGG---CGCC- -5'
6368 3' -59.3 NC_001847.1 + 101057 0.8 0.148586
Target:  5'- -cCGCCGAgGcCGGCcccggGGCCGCCGCGGg -3'
miRNA:   3'- gaGCGGUUgCaGCUG-----UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 30252 0.77 0.214372
Target:  5'- gUCGCUGGCGgCGuuGCAGCgCGCCGCGGc -3'
miRNA:   3'- gAGCGGUUGCaGC--UGUCG-GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 73704 0.76 0.247044
Target:  5'- cCUCGCC-GCGccCGGCGGCgCgGCCGCGGg -3'
miRNA:   3'- -GAGCGGuUGCa-GCUGUCG-G-CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4402 0.76 0.264874
Target:  5'- gUCGCCGcCGUCGAC-GCCGaCgGCGGc -3'
miRNA:   3'- gAGCGGUuGCAGCUGuCGGC-GgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 87273 0.79 0.16408
Target:  5'- uCUCGCgGACGUgcgcgcCGACGGCCcgcgGCCGCGGc -3'
miRNA:   3'- -GAGCGgUUGCA------GCUGUCGG----CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 67307 0.78 0.194707
Target:  5'- -gCGCCAGCGcCGGCAGCC-CCGcCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGUCGGcGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.