miRNA display CGI


Results 1 - 20 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 114670 1.09 0.001498
Target:  5'- cCUCGCCAACGUCGACAGCCGCCGCGGc -3'
miRNA:   3'- -GAGCGGUUGCAGCUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 119147 0.88 0.044156
Target:  5'- gCUCGUCGGCGcCG-CGGCCGCCGCGGg -3'
miRNA:   3'- -GAGCGGUUGCaGCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 38964 0.84 0.080649
Target:  5'- -gCGCCAugG-CGGCGGCCGCgGCGGg -3'
miRNA:   3'- gaGCGGUugCaGCUGUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 19633 0.83 0.099121
Target:  5'- -gCGCCGGCGUCGGCgcgcGGCCGCuUGCGGg -3'
miRNA:   3'- gaGCGGUUGCAGCUG----UCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 38058 0.82 0.104329
Target:  5'- -cCGCCGcggcuaagcuGCGcgCGGCGGCCGCCGCGGu -3'
miRNA:   3'- gaGCGGU----------UGCa-GCUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 34918 0.82 0.112625
Target:  5'- uCUCGCCAGCGa-GAgAGCUGCUGCGGg -3'
miRNA:   3'- -GAGCGGUUGCagCUgUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 45793 0.82 0.115525
Target:  5'- -gCGCCGGCGUCGGCGGCCGagacuacuaGCGGg -3'
miRNA:   3'- gaGCGGUUGCAGCUGUCGGCgg-------CGCC- -5'
6368 3' -59.3 NC_001847.1 + 123451 0.82 0.115525
Target:  5'- uUUGCCGGgcuuggccCGgCGACGGCCGCCGCGGg -3'
miRNA:   3'- gAGCGGUU--------GCaGCUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 83118 0.81 0.118495
Target:  5'- cCUCGCgUAGCaccuccUCGGCGGCCGCCGCGGc -3'
miRNA:   3'- -GAGCG-GUUGc-----AGCUGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 31422 0.81 0.124648
Target:  5'- -gCGCCGGCGggCGGCGGCCggcgGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGCa-GCUGUCGG----CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 134235 0.81 0.124648
Target:  5'- -gCGCCGGCGggCGGCGGCCggcgGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGCa-GCUGUCGG----CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 118402 0.8 0.141349
Target:  5'- cCUCGUCAGCGUCGugGccGUCGCCuGCGGu -3'
miRNA:   3'- -GAGCGGUUGCAGCugU--CGGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 101057 0.8 0.148586
Target:  5'- -cCGCCGAgGcCGGCcccggGGCCGCCGCGGg -3'
miRNA:   3'- gaGCGGUUgCaGCUG-----UCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 70433 0.8 0.156159
Target:  5'- --gGCCGAagcguUGUCGACGGCCGCgCGCGGc -3'
miRNA:   3'- gagCGGUU-----GCAGCUGUCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132387 0.79 0.16408
Target:  5'- -gCGCCGGCGcCGGC-GCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGuCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 87273 0.79 0.16408
Target:  5'- uCUCGCgGACGUgcgcgcCGACGGCCcgcgGCCGCGGc -3'
miRNA:   3'- -GAGCGgUUGCA------GCUGUCGG----CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 29574 0.79 0.16408
Target:  5'- -gCGCCGGCGcCGGC-GCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGuCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 104498 0.79 0.168174
Target:  5'- -gCGCCAGCaccgccucuUCGGCGGCCGCCGCGu -3'
miRNA:   3'- gaGCGGUUGc--------AGCUGUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 39358 0.79 0.18101
Target:  5'- -aCGuCCAGCGUCGACAGCagcuccgcgaCGCCGuCGGg -3'
miRNA:   3'- gaGC-GGUUGCAGCUGUCG----------GCGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 69081 0.78 0.190043
Target:  5'- gCUCGCC-GCGUCuGGC-GCCGCgCGCGGa -3'
miRNA:   3'- -GAGCGGuUGCAG-CUGuCGGCG-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.