miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 5' -56.8 NC_001847.1 + 119097 0.66 0.836435
Target:  5'- -gCCGCgGCCGccGCGGGGCgGCgGGGCAGg -3'
miRNA:   3'- aaGGCG-CGGC--UGUUCUG-UG-CCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 61935 0.66 0.836435
Target:  5'- cUCCGCGUCaGCGGcGGCGCGGcccgcGCGGg -3'
miRNA:   3'- aAGGCGCGGcUGUU-CUGUGCC-----UGUCa -5'
6368 5' -56.8 NC_001847.1 + 68917 0.66 0.836435
Target:  5'- -gCCGCGCUGAgGuucGGCGCGG-CGGc -3'
miRNA:   3'- aaGGCGCGGCUgUu--CUGUGCCuGUCa -5'
6368 5' -56.8 NC_001847.1 + 119151 0.66 0.836435
Target:  5'- gUCgGCGCCGcggccgccGCGGGGCgGCgGGGCAGg -3'
miRNA:   3'- aAGgCGCGGC--------UGUUCUG-UG-CCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 107416 0.66 0.836435
Target:  5'- aUCCGCcacagcucgGCCaGCucGGCGCGGGCGGc -3'
miRNA:   3'- aAGGCG---------CGGcUGuuCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 35621 0.66 0.836435
Target:  5'- -gCCGcCGCCGGCGGcGCugGGGcCAGc -3'
miRNA:   3'- aaGGC-GCGGCUGUUcUGugCCU-GUCa -5'
6368 5' -56.8 NC_001847.1 + 101949 0.66 0.828025
Target:  5'- -cCCGCGCCGcCAAGu--CGGGCGc- -3'
miRNA:   3'- aaGGCGCGGCuGUUCuguGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 18713 0.66 0.828025
Target:  5'- -gCCaGCGCCG-CGGGGagcgccaGCGGGCGGUu -3'
miRNA:   3'- aaGG-CGCGGCuGUUCUg------UGCCUGUCA- -5'
6368 5' -56.8 NC_001847.1 + 33752 0.66 0.828025
Target:  5'- -cCCGauuGCCGGCGGcGcCGCGGGCAGc -3'
miRNA:   3'- aaGGCg--CGGCUGUU-CuGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 10592 0.66 0.828025
Target:  5'- -gCCGCGCUgcucucggcaGACGcAGACGCGG-UAGUg -3'
miRNA:   3'- aaGGCGCGG----------CUGU-UCUGUGCCuGUCA- -5'
6368 5' -56.8 NC_001847.1 + 73708 0.66 0.828025
Target:  5'- -gCCGCGcCCGGC--GGCGCGGccGCGGg -3'
miRNA:   3'- aaGGCGC-GGCUGuuCUGUGCC--UGUCa -5'
6368 5' -56.8 NC_001847.1 + 51434 0.66 0.828025
Target:  5'- -gCCGC-CCGcGCGcGACAUGGACGGc -3'
miRNA:   3'- aaGGCGcGGC-UGUuCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 85082 0.66 0.828025
Target:  5'- gUCCGCGCCG-C---GCGCGGACc-- -3'
miRNA:   3'- aAGGCGCGGCuGuucUGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 129481 0.66 0.827174
Target:  5'- -gCCGCGCgCGACGGcGCGCauccgcuGGACGGg -3'
miRNA:   3'- aaGGCGCG-GCUGUUcUGUG-------CCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 31485 0.66 0.819434
Target:  5'- cUUUCGCGCCGGC--GACGCGGuCu-- -3'
miRNA:   3'- -AAGGCGCGGCUGuuCUGUGCCuGuca -5'
6368 5' -56.8 NC_001847.1 + 30728 0.66 0.819434
Target:  5'- -cCCGCGCgGACGuggccGACugGG-CGGg -3'
miRNA:   3'- aaGGCGCGgCUGUu----CUGugCCuGUCa -5'
6368 5' -56.8 NC_001847.1 + 33527 0.66 0.819434
Target:  5'- -gCCGCGgaGGCGccGGGCGCGGGCGc- -3'
miRNA:   3'- aaGGCGCggCUGU--UCUGUGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 19429 0.66 0.819434
Target:  5'- -cCCGUGgCGGCAAGcgcACACGGGCc-- -3'
miRNA:   3'- aaGGCGCgGCUGUUC---UGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 7894 0.66 0.819434
Target:  5'- -aCCuaGCCGcGCGGGGCGCGcGGCGGc -3'
miRNA:   3'- aaGGcgCGGC-UGUUCUGUGC-CUGUCa -5'
6368 5' -56.8 NC_001847.1 + 61544 0.66 0.819434
Target:  5'- cUCUGCgagccGCCGGCAAcGGCACGGugcgcgagguGCAGa -3'
miRNA:   3'- aAGGCG-----CGGCUGUU-CUGUGCC----------UGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.