miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 5' -56.8 NC_001847.1 + 130535 0.69 0.654198
Target:  5'- -cCCGCGCCGAgcuggcCGAgcuGugGCGGAUGGUg -3'
miRNA:   3'- aaGGCGCGGCU------GUU---CugUGCCUGUCA- -5'
6368 5' -56.8 NC_001847.1 + 115878 0.7 0.634582
Target:  5'- gUCgCGcCGCCGGCcagaaccgguccgccGGACGCGGACGGg -3'
miRNA:   3'- aAG-GC-GCGGCUGu--------------UCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 116445 0.71 0.571824
Target:  5'- -gCgGCGCUGGCGGuGACGCGGGCcGUg -3'
miRNA:   3'- aaGgCGCGGCUGUU-CUGUGCCUGuCA- -5'
6368 5' -56.8 NC_001847.1 + 44674 0.74 0.400496
Target:  5'- -aCCGUGaCCGGCGAGcCGCGGAUGGg -3'
miRNA:   3'- aaGGCGC-GGCUGUUCuGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 101089 0.68 0.735359
Target:  5'- -gCCGgGUCGGCGGGGCggGCGGGCGcGUu -3'
miRNA:   3'- aaGGCgCGGCUGUUCUG--UGCCUGU-CA- -5'
6368 5' -56.8 NC_001847.1 + 36829 0.69 0.69521
Target:  5'- --gCGCGCCGACuggGGGCugGCGGACGu- -3'
miRNA:   3'- aagGCGCGGCUGu--UCUG--UGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 124595 0.7 0.623219
Target:  5'- -cCCgGCGCCGGCcGGGCGCGGGucccCGGg -3'
miRNA:   3'- aaGG-CGCGGCUGuUCUGUGCCU----GUCa -5'
6368 5' -56.8 NC_001847.1 + 37267 0.75 0.343176
Target:  5'- aUCCGCGCCGcCGacugGGACGCGGGCc-- -3'
miRNA:   3'- aAGGCGCGGCuGU----UCUGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 131465 0.69 0.674775
Target:  5'- gUUCGUGCCGGagauggGGGACGCGGggaaGCAGUa -3'
miRNA:   3'- aAGGCGCGGCUg-----UUCUGUGCC----UGUCA- -5'
6368 5' -56.8 NC_001847.1 + 54810 0.78 0.247004
Target:  5'- -gCCGCGCUGGCGAG-CGCGGGCAc- -3'
miRNA:   3'- aaGGCGCGGCUGUUCuGUGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 65529 0.7 0.623219
Target:  5'- cUCCGCGCucacCGAgGGGGCgcucGCGGACGGc -3'
miRNA:   3'- aAGGCGCG----GCUgUUCUG----UGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 102816 0.69 0.6645
Target:  5'- cUCCGCGCCG-CGccGCGCGGGCc-- -3'
miRNA:   3'- aAGGCGCGGCuGUucUGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 56858 0.7 0.602587
Target:  5'- gUCUGCGcCCGGCGgcccGGGCGCGGccACGGg -3'
miRNA:   3'- aAGGCGC-GGCUGU----UCUGUGCC--UGUCa -5'
6368 5' -56.8 NC_001847.1 + 59890 0.71 0.571824
Target:  5'- cUCCGCGuuGGCGAGGa--GGGCGGc -3'
miRNA:   3'- aAGGCGCggCUGUUCUgugCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 132221 0.73 0.472992
Target:  5'- -gCCGCGCUGGC--GGCGCGGACcGUg -3'
miRNA:   3'- aaGGCGCGGCUGuuCUGUGCCUGuCA- -5'
6368 5' -56.8 NC_001847.1 + 33493 0.74 0.409169
Target:  5'- gUCCGCGgCGGC--GGCGCGGGCGGc -3'
miRNA:   3'- aAGGCGCgGCUGuuCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 75005 0.68 0.745192
Target:  5'- gUCCGCcgGCgGGCGGGGggccaGCGGGCAGa -3'
miRNA:   3'- aAGGCG--CGgCUGUUCUg----UGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 10511 0.68 0.735359
Target:  5'- -cCCGCGCUGcuGCGGGcCAUGGAgCGGUg -3'
miRNA:   3'- aaGGCGCGGC--UGUUCuGUGCCU-GUCA- -5'
6368 5' -56.8 NC_001847.1 + 106088 0.68 0.71543
Target:  5'- -gCCGCgcgGCCGGCGAG-CACGGcgcGCAGc -3'
miRNA:   3'- aaGGCG---CGGCUGUUCuGUGCC---UGUCa -5'
6368 5' -56.8 NC_001847.1 + 69085 0.69 0.69521
Target:  5'- -gCCGCGuCUGGCGccgcGCGCGGACGGg -3'
miRNA:   3'- aaGGCGC-GGCUGUuc--UGUGCCUGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.