miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 5' -56.8 NC_001847.1 + 73180 0.83 0.109076
Target:  5'- -gCCGCGCCGGCGGGcacggcGCGCGGGCAGg -3'
miRNA:   3'- aaGGCGCGGCUGUUC------UGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 124595 0.7 0.623219
Target:  5'- -cCCgGCGCCGGCcGGGCGCGGGucccCGGg -3'
miRNA:   3'- aaGG-CGCGGCUGuUCUGUGCCU----GUCa -5'
6368 5' -56.8 NC_001847.1 + 115878 0.7 0.634582
Target:  5'- gUCgCGcCGCCGGCcagaaccgguccgccGGACGCGGACGGg -3'
miRNA:   3'- aAG-GC-GCGGCUGu--------------UCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 106601 0.66 0.8605
Target:  5'- -cCCGCGCCGcCGAagcgcacgcGGC-CGGGCGGc -3'
miRNA:   3'- aaGGCGCGGCuGUU---------CUGuGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 33493 0.74 0.409169
Target:  5'- gUCCGCGgCGGC--GGCGCGGGCGGc -3'
miRNA:   3'- aAGGCGCgGCUGuuCUGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 131902 0.73 0.454228
Target:  5'- -cCUGcCGCCGGCGAGcacgGCGCGGGCGGc -3'
miRNA:   3'- aaGGC-GCGGCUGUUC----UGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 132221 0.73 0.472992
Target:  5'- -gCCGCGCUGGC--GGCGCGGACcGUg -3'
miRNA:   3'- aaGGCGCGGCUGuuCUGUGCCUGuCA- -5'
6368 5' -56.8 NC_001847.1 + 124531 0.72 0.511633
Target:  5'- -aCCaGCGCCaGCAGGGCGCGGGCcGg -3'
miRNA:   3'- aaGG-CGCGGcUGUUCUGUGCCUGuCa -5'
6368 5' -56.8 NC_001847.1 + 59890 0.71 0.571824
Target:  5'- cUCCGCGuuGGCGAGGa--GGGCGGc -3'
miRNA:   3'- aAGGCGCggCUGUUCUgugCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 63450 0.7 0.623219
Target:  5'- -aCCGCGCaGACGcGGACGCGG-CGGg -3'
miRNA:   3'- aaGGCGCGgCUGU-UCUGUGCCuGUCa -5'
6368 5' -56.8 NC_001847.1 + 50067 0.7 0.5923
Target:  5'- gUCCGCGCgCGGCGcGGACcCGGGCGc- -3'
miRNA:   3'- aAGGCGCG-GCUGU-UCUGuGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 116445 0.71 0.571824
Target:  5'- -gCgGCGCUGGCGGuGACGCGGGCcGUg -3'
miRNA:   3'- aaGgCGCGGCUGUU-CUGUGCCUGuCA- -5'
6368 5' -56.8 NC_001847.1 + 54810 0.78 0.247004
Target:  5'- -gCCGCGCUGGCGAG-CGCGGGCAc- -3'
miRNA:   3'- aaGGCGCGGCUGUUCuGUGCCUGUca -5'
6368 5' -56.8 NC_001847.1 + 56858 0.7 0.602587
Target:  5'- gUCUGCGcCCGGCGgcccGGGCGCGGccACGGg -3'
miRNA:   3'- aAGGCGC-GGCUGU----UCUGUGCC--UGUCa -5'
6368 5' -56.8 NC_001847.1 + 37267 0.75 0.343176
Target:  5'- aUCCGCGCCGcCGacugGGACGCGGGCc-- -3'
miRNA:   3'- aAGGCGCGGCuGU----UCUGUGCCUGuca -5'
6368 5' -56.8 NC_001847.1 + 80764 0.72 0.511633
Target:  5'- gUCCGCGCCGGCGcGGAC-CgGGACGa- -3'
miRNA:   3'- aAGGCGCGGCUGU-UCUGuG-CCUGUca -5'
6368 5' -56.8 NC_001847.1 + 108032 0.7 0.623219
Target:  5'- -gCCGCggcgGCCGGCGGGGCGCGcGCGGc -3'
miRNA:   3'- aaGGCG----CGGCUGUUCUGUGCcUGUCa -5'
6368 5' -56.8 NC_001847.1 + 65529 0.7 0.623219
Target:  5'- cUCCGCGCucacCGAgGGGGCgcucGCGGACGGc -3'
miRNA:   3'- aAGGCGCG----GCUgUUCUG----UGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 44674 0.74 0.400496
Target:  5'- -aCCGUGaCCGGCGAGcCGCGGAUGGg -3'
miRNA:   3'- aaGGCGC-GGCUGUUCuGUGCCUGUCa -5'
6368 5' -56.8 NC_001847.1 + 67522 0.73 0.470152
Target:  5'- gUCUcCGCCGGCGccgccuuuuuccgcAGGCGCGGGCGGUu -3'
miRNA:   3'- aAGGcGCGGCUGU--------------UCUGUGCCUGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.